Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco03g0247 | ATGGAGTCCAGTGAGCCAAAATCCAGCCCAACTTCAACTAACCTCCTTTCTCAGTCGTCGCCGTCGTCTCCTTCACCCCCGCCGAGTGTTCAGGCCGCCGTGGTGGTCAGTCCGTGTGCGGCGTGCAAGATTCTGAGGCGGAGATGCGCAGAGAAATGCGTATTAGCGCCCTATTTTCCTCCCTCTGATCCTCTCAAATTCACCATTGCTCACCGTGTCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGATTCGCAAAGGGCTGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGCCAGCTTCAGAAACAGGTAAACGAATTGCAAGCAGAACTAGCCAAGACACAGGCTGAGCTCGTCAATATCCATTGCCACCAAGCGAATGTGGTGGCTCTGATTTGCAAGGAGTTGGCCCAAACGCCGCCACCGATGTCGCCGCTGCCGGACCACCGCTCACTTGACAACAATTTCAACATTGCCACACCTCAGAGCTACCAAGGCTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACATGA | 609 | 51.4 | MESSEPKSSPTSTNLLSQSSPSSPSPPPSVQAAVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQVNELQAELAKTQAELVNIHCHQANVVALICKELAQTPPPMSPLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT | 202 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 2730692 | 2731704 | + | CcPI632755_03g002470.1 | Cco03g0247 | 173606 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco03g0247 | 202 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Cco03g0247 | 202 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 36 | 158 | - | - | |
| Cco03g0247 | 202 | Coils | Coil | 117 | 144 | - | - | |
| Cco03g0247 | 202 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cco03g0247 | 202 | Pfam | Lateral organ boundaries (LOB) domain | 38 | 135 | IPR004883 | - | |
| Cco03g0247 | 202 | ProSiteProfiles | LOB domain profile. | 37 | 138 | IPR004883 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g2238 | Cco-Chr2:34988973 | Cco03g0247 | Cco-Chr3:2730692 | 7.00E-55 | dispersed | |
| Cco03g0247 | Cco-Chr3:2730692 | Cco07g0478 | Cco-Chr7:5715761 | 3.30E-39 | dispersed | |
| Cco03g0246 | Cco-Chr3:2703618 | Cco03g0247 | Cco-Chr3:2730692 | 8.50E-68 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 58895 | PF03195 | LOB | 4.50E-41 | No_clan | Cco | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco03g0247 | - | - | - | 0.0 |