Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0247 ATGGAGTCCAGTGAGCCAAAATCCAGCCCAACTTCAACTAACCTCCTTTCTCAGTCGTCGCCGTCGTCTCCTTCACCCCCGCCGAGTGTTCAGGCCGCCGTGGTGGTCAGTCCGTGTGCGGCGTGCAAGATTCTGAGGCGGAGATGCGCAGAGAAATGCGTATTAGCGCCCTATTTTCCTCCCTCTGATCCTCTCAAATTCACCATTGCTCACCGTGTCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGATTCGCAAAGGGCTGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGCCAGCTTCAGAAACAGGTAAACGAATTGCAAGCAGAACTAGCCAAGACACAGGCTGAGCTCGTCAATATCCATTGCCACCAAGCGAATGTGGTGGCTCTGATTTGCAAGGAGTTGGCCCAAACGCCGCCACCGATGTCGCCGCTGCCGGACCACCGCTCACTTGACAACAATTTCAACATTGCCACACCTCAGAGCTACCAAGGCTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACATGA 609 51.4 MESSEPKSSPTSTNLLSQSSPSSPSPPPSVQAAVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQVNELQAELAKTQAELVNIHCHQANVVALICKELAQTPPPMSPLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT 202
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 2730692 2731704 + CcPI632755_03g002470.1 Cco03g0247 173606
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0247 202 MobiDBLite consensus disorder prediction 1 29 - -
Cco03g0247 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 36 158 - -
Cco03g0247 202 Coils Coil 117 144 - -
Cco03g0247 202 MobiDBLite consensus disorder prediction 1 20 - -
Cco03g0247 202 Pfam Lateral organ boundaries (LOB) domain 38 135 IPR004883 -
Cco03g0247 202 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2238 Cco-Chr2:34988973 Cco03g0247 Cco-Chr3:2730692 7.00E-55 dispersed
Cco03g0247 Cco-Chr3:2730692 Cco07g0478 Cco-Chr7:5715761 3.30E-39 dispersed
Cco03g0246 Cco-Chr3:2703618 Cco03g0247 Cco-Chr3:2730692 8.50E-68 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58895 PF03195 LOB 4.50E-41 No_clan Cco TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0247 - - - 0.0