Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0261 ATGATTGTAGCAGCAGGGTCGAGCTCCAATGGCGGAATTGGGAGCGGAGAATTGGCCAATTTTGTCCGGCAAGTGGTGGTGGGGCGGTGGTTTTCTCTTTTTGCTTCGTTCCTTGTAATGACCGGCGCCGGCGGAGTTTATTTGTTCGCTTATTACTCTAGAGACATCAAAAAGACGCTCCAATGTGATCAAACGACACTAAACAAAATTGGGTTTTACAAAGATTTGGGATCCAACGTCGGCGTTATTGCCGGACTTCTGGCGGAGGTGGCGCCAACTTGGCTCGTTCTTCTCATCGGCGCCGCCTTCAATTTTCTTGGCTACTTTAAGATATGGCAAGCCGTCACCGGAAAAATTGTTCAGCCCACCGTCGCCTTCTTTTGCTTTTACATTATGGTTGGAGCTAATTCTCAGAATTTTGCCAATACAGGAGTACTTGTCACGTGCGTGAAGAACTTTCCAGAAAGAAGAGGAGTGATGTTGGGCCTTCTAAAGGGCTTTGTGGGCCTAAGCGGAGCTATCATGACCCAACTTTACATTGCGATTTACGGCCACGATACCAAATCTCTTGTTCTTCTAATCGCCTGGTTTCCTTCTATAATCTCTTTGATCTTCGTCTACACAATCAGAGAAATCAAAGCCGTAAAACACCCAAATGAATTTAGAGTTTTCGTTCAATTCCTTTGCGTCACAGTCCTTTTAGCCATCTTCCTCACCGTCTTAGTCTTCGTTCAAAAACGAGTCCGATTCCATCAATCAGCTCACATCGCCATTGTCTCTGCGATTCTTGCTCTGCTTATTGTTCCATTGTTAATCGCCATTAGAGAAGAACTCCTTCTCTGGAATCTCAATAAACGAACTATTCCTACAAACCCTTTCACCAGAATTAGAATCGAAAACAACCCCCAAACAACAACCCCAATTCCTTCTTCAAATCAAATTCAATTCAGTTCTTGTTTCGCTAACATTTTCAACAAACCAGAAAGAGGCGAAGATTACACAGTTCTTCAAGCGATTTTCAGTATCGATATGCTTATTTTATGTTCCACTATGTTAATCGGCGTCGGTGCAAGCTTAACCGCCATTGACAATCTAGGGCAAATCGGTGAATCCCAAGGCTATCCATCTGAAACAATCAACTCATTCATCTCTTTAGTAAGTATTTTCAACTTCACTGGTAGAATCTTTTCTGGGTTCGTCTCGGAAATCTTGCTTGAGAAATTCAAATTCCCTAGGCCATTGATGCTCACACTCATCCTCTTGATTTCCTGCATTGGGCATCTTTTGGTAGCCTTTCCCTTTGAGGATTCGCTCTACGTTGCTTCAATCATAATTGGATTTTCAATGGGGTCTCAAGTTCCATTGCATTTCGCGATGATTTCAGAGATTTTTGGGCTGAAACATTACTCGACTTTGTTTAATTTTGGGCAATTGTCTTGTCCAATTGGGTCTTATATTCTGAATGTAATGGTGACTGGGAAGATGTATGATAAGGTAGCGCAATTGGGGAGTAATCCAAACAAGTTTCATTGTGCAGGAAGTCATTGTTATGAACAATCGTTTTTGATTTTGGGTGGATTAACGTTTATTGTAGCGATGATATCGTTGATTTTGGTGATGAGGACGAGGGATTTTTATAGAGGGGATATATACAAGAAATTCAGGGAAGATATGGAATCTTTGAAGACGGAAGTCGAGTTTTACAAATTAGATGAGAAGAGGACTAGGATTGGGAATTTACTTGTTGATAAATATACCATCAATTTCAAGAGGTGA 1776 41.67 MIVAAGSSSNGGIGSGELANFVRQVVVGRWFSLFASFLVMTGAGGVYLFAYYSRDIKKTLQCDQTTLNKIGFYKDLGSNVGVIAGLLAEVAPTWLVLLIGAAFNFLGYFKIWQAVTGKIVQPTVAFFCFYIMVGANSQNFANTGVLVTCVKNFPERRGVMLGLLKGFVGLSGAIMTQLYIAIYGHDTKSLVLLIAWFPSIISLIFVYTIREIKAVKHPNEFRVFVQFLCVTVLLAIFLTVLVFVQKRVRFHQSAHIAIVSAILALLIVPLLIAIREELLLWNLNKRTIPTNPFTRIRIENNPQTTTPIPSSNQIQFSSCFANIFNKPERGEDYTVLQAIFSIDMLILCSTMLIGVGASLTAIDNLGQIGESQGYPSETINSFISLVSIFNFTGRIFSGFVSEILLEKFKFPRPLMLTLILLISCIGHLLVAFPFEDSLYVASIIIGFSMGSQVPLHFAMISEIFGLKHYSTLFNFGQLSCPIGSYILNVMVTGKMYDKVAQLGSNPNKFHCAGSHCYEQSFLILGGLTFIVAMISLILVMRTRDFYRGDIYKKFREDMESLKTEVEFYKLDEKRTRIGNLLVDKYTINFKR 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2837047 2839172 - CcPI632755_03g002610.1 Cco03g0261 173620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0261 591 Coils Coil 551 571 - -
Cco03g0261 591 Pfam Major Facilitator Superfamily 347 543 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Cco03g0261 591 Pfam Nodulin-like 29 274 IPR010658 -
Cco03g0261 591 Gene3D MFS general substrate transporter like domains 319 545 IPR036259 -
Cco03g0261 591 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 28 555 - GO:0016020(PANTHER)
Cco03g0261 591 CDD MFS_Mch1p_like 28 532 - -
Cco03g0261 591 SUPERFAMILY MFS general substrate transporter 33 547 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0261 Cco-Chr3:2837047 Cco03g0274 Cco-Chr3:2909989 9.20E-175 dispersed
Cco03g0261 Cco-Chr3:2837047 Cco03g0264 Cco-Chr3:2852638 9.00E-29 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0261 - - - 0.0