Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0269 ATGGATTCAGAAGTATGGGCATTCACAAAACAAGTTTTAGCAGGACGATGGTTTTCAGTATTCGCCGGCTTAATAATGATGCTTGGCAATGGCTCCACTTACATCTATGGAACATATTCAAAAGTCATCAAGACCCGATTTGATTATAGCCAAACCCAAATTAACATATTAGGATTTGCTAAAGATCTCGGCTCCAATGTCGGTATTTTCGCAGGTCTTCTAGCCGAGGTGGCTCCGCCGTGGGTTCTCTTCGTACTCGGTGCTGCCCAGAACTTCGCTGGGTTCTTCTTGATATGGCTGGCCATCACACACCGTATCCCTCAACCAAAATTCTGGCAAATGTTCCTTTTCGTTTGCTTTGGTACTAATTCTTCAAATTTTGGGAATACAGCCATTATGGTGGCAAGTGTAAGAAACTTCCCAGACCGTCGGGGTATCATTTTGGGGTTGCTGAAAGGGTTTGTTGGTATTGGTGGTGCTGTTTATACCCAAATATATTTAGGTCTTTACGGCCATGAAGATCCAGCTAATCTTGTTCTTCTTTTTGCTTGGCTTCCCTCTACAGTAATCCTCATTCTTTTCCCCTCAATTCGATCAATCCGTATCCGTAAACATCCTGAAGAACTCAAAGTGTTTTACCATTTACTTTACGTCTCTATCGTTATAGCTCTGTTCATCCTGTTTTTAACCCTTGCACAGAAAGAAGTTGTTTTCTCTCAAGCTGGGTATGGGAGTGGAGCAACCGTGGTGGTTGCGTTACTATTCCTACCCCTTTTAATCACATGTAGAGAAGAATTCTTATTGTACAGACTCAACAAACAAAACGATGACGCTTCGGTTACTCTATCCGTCAATGAGCAAAAGCCTCCCACCGTAATCACAACAGAGAAAACAGAGATTTTGGGGTCGTGTTTGTCAAGAGTATGGAATAAACCTGAAAGAGGGGAAGATTTCACCATCTTGCAAGCTATCTTCAGTATAGATATGGCTCTTATTTATCTAGCTACTTTTTCTGGATCTGGTTCTTCTCTTGCAGCCATTGATAATTTAGGCCAGATTGGGGAATCACTTGGCTACCCACCACGAGCGATAAGCATCTTCGTTTCTTGGGTTTCCGTATTCAATTTCTTCGGCCGAGTCTTCTCCGGTTTCATCTCGGAAACTATGATGACTAAATACAAATTACCTCGTCCTCTATTATTTGCTTTTGCCTTTCTCATCACTTGCATTGGCCAGCTTATCATCGCGTATCCCACTCGGGGTTCGGTCTACCTTGCTTCCATGATTATCGGGTTCGGGTTCGGAACTCAAGTGCCATTGCTATTCGCCATAATCTCTGAGATTTTTGGGCTAAAACATTACTCCACATTGTTCAATTTTGGGCAATTGGTAGTCCCAATTGGGTCTTATTTACTAAACGTGGATGTTGTAGGCAGCTTGTACGATAAGGAAGCATTACATGAAGGTAGAAAGATGACGGGCAAGGGGATAACTTGCACCGGAGCTCATTGCTTTAGTGGATCTTTCACTATTTTGGCTGCAGCGACATTGTTTGCAGCTTTGATTATGCTTGTGTTGGCTTATAGGACTCGAGAATTCTACAAAGGAGATGTATACAAGAAATACAGAGAGGATATATGGATTTCGCAGACCGAAATGGAGTTCTATCGCGTAGACAAAAAGACACTTGACGACTAA 1698 42.46 MDSEVWAFTKQVLAGRWFSVFAGLIMMLGNGSTYIYGTYSKVIKTRFDYSQTQINILGFAKDLGSNVGIFAGLLAEVAPPWVLFVLGAAQNFAGFFLIWLAITHRIPQPKFWQMFLFVCFGTNSSNFGNTAIMVASVRNFPDRRGIILGLLKGFVGIGGAVYTQIYLGLYGHEDPANLVLLFAWLPSTVILILFPSIRSIRIRKHPEELKVFYHLLYVSIVIALFILFLTLAQKEVVFSQAGYGSGATVVVALLFLPLLITCREEFLLYRLNKQNDDASVTLSVNEQKPPTVITTEKTEILGSCLSRVWNKPERGEDFTILQAIFSIDMALIYLATFSGSGSSLAAIDNLGQIGESLGYPPRAISIFVSWVSVFNFFGRVFSGFISETMMTKYKLPRPLLFAFAFLITCIGQLIIAYPTRGSVYLASMIIGFGFGTQVPLLFAIISEIFGLKHYSTLFNFGQLVVPIGSYLLNVDVVGSLYDKEALHEGRKMTGKGITCTGAHCFSGSFTILAAATLFAALIMLVLAYRTREFYKGDVYKKYREDIWISQTEMEFYRVDKKTLDD 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2880957 2882654 + CcPI632755_03g002690.1 Cco03g0269 173628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0269 565 Gene3D MFS general substrate transporter like domains 318 535 IPR036259 -
Cco03g0269 565 SUPERFAMILY MFS general substrate transporter 16 532 IPR036259 -
Cco03g0269 565 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 15 542 - GO:0016020(PANTHER)
Cco03g0269 565 Pfam Nodulin-like 16 261 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0269 Cco-Chr3:2880957 Cco03g0271 Cco-Chr3:2889862 7.10E-217 dispersed
Cco03g0269 Cco-Chr3:2880957 Cco03g0270 Cco-Chr3:2885199 9.80E-259 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0269 - - - 0.0