Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0270 ATGGGATCAGAAGCCTGGGCTTTCACCAAACAAGTCATAGAAGGACGATGGTTTTCAGTATTCGCCGGAATGATGATGATGATCGGCAATGGTTCAACATACATTTATGGAACATACTCCAAAGTCGTCAAGACCGAATTTAATTACAGCCAAACCCAAATTAACACATTAGGATTCGCCAAAGATCTCGGTTCCAACGCCGGAATTTTCGCCGGCCTTCTCGCCGAGGTGGTTCCCACGTGGGTTCTCTTCATGATCGGTGCTGCCCAAAACTTCACTGGCTACTTCTTCATATGGCTGGCCATCACACGTCGTATCCCTCAACCAAAATTCTGGCAAATGTTCCTTTTCGTTTGTTTTGGAACTAATTCTTCTAATTTTTCCAATACAGGAATTATGGTCCATAGCGTCAGAAACTTCCCTGACCGTCGTGGTATCATTTTAGGGTTGCTTAAAGGGTATGTTGGTATTGGAGGTGCTATTTTAACCCAAGTTTATTTAGGAATTTATGGCCCTGAAGACCCATCAAATCTTGTTCTTCTTTTTGCTTGGTTTCCCACTACAGTAATTCTCCTTCTTTTCACCTCCATTCGACCAATTCGTATTCGTAAACATCCCGAAGAACTCAAAGTTTTTTACCATTTACTTTACGTCTCTGTTGTTCTAGCAATTTTCATCTTGTTTTTGACTATTACACAAAAAGAAGTGGTTTTCTCTCAAGCTGCGTATGTGAGTGGCGCGTCCGTCGTCGTTACCTTACTCTTTTTACCCCTTTTGATCGCTTGTAGAGAAGAATTCTTGTTGTACAAACTCAAGAAACAAAACTTTAACCTTGATCCTTCTGTTGCTCTATCCATTGTTGAACCAAAGATTTCTTCTCAAACCACCACTAACAAACCATTTCCCACATTAGAGGAAGTAGCAGAGATTTCGCCCACCACGTGTTTCGAAAACATATGCAACAAACCAGAACGAGGCGAAGATTTCACCATCTTGCAAGCCATCTTTAGCAAAGATATGGCTCTTATTTCTTTAGCTACTTTTTCTGGATGTGGGTCTTCTCTTGCAGCCATTGATAATTTAGGCCAAATTGGTGAATCACTTGGCTATCCACCACGAGCTATAAGCATATTGGTTTCATGGGTTTCCATATTCAATTTCTTTGGCAGAGTCTTCTCAGGTTTCATCTCCGAAAACTTGATTATCAAATACAGATTACCTCGTCCTTTAACATTTGCTTTTGCCTTTCTTCTCACTTGCATTGGCCAGCTTTGCATCGCGTATCCGTTTCCGGGTTCGGTCTACGTCGCTTCGATTGTTATCGGGTTCGGATTTGGAGCTCAAAATCCATTACTATTCGCGGTAATATCAGAGATGTTTGGACTAAAACATTACGCCATATTGTTCAATTGTGGGCAATTGGTAGTCCCAATAGGGTCTTATATACTAAATGTGGATATAGTTGGGAAATTGTATGATACAGAAGCTTTACGTGAAGGTAGAAAGATGACGGGCAAGGGGATAACTTGCACGGGAGCTCATTGTTTTAGTGGATCTTTCACAATTTTGGCTGTAGTGACATTGTTTGGAGCTTTGGTTATGCTTGTGTTGGCTTATAGGGCACGAGAATACTATAAATGGGATGTATATAAGAATTGCCGAGAGGATATATGGATTCCCCAAGAAGAAATGGAGTTCTATCGCTTAGACAACAGGAAGAACATTGATGACTAA 1734 41.0 MGSEAWAFTKQVIEGRWFSVFAGMMMMIGNGSTYIYGTYSKVVKTEFNYSQTQINTLGFAKDLGSNAGIFAGLLAEVVPTWVLFMIGAAQNFTGYFFIWLAITRRIPQPKFWQMFLFVCFGTNSSNFSNTGIMVHSVRNFPDRRGIILGLLKGYVGIGGAILTQVYLGIYGPEDPSNLVLLFAWFPTTVILLLFTSIRPIRIRKHPEELKVFYHLLYVSVVLAIFILFLTITQKEVVFSQAAYVSGASVVVTLLFLPLLIACREEFLLYKLKKQNFNLDPSVALSIVEPKISSQTTTNKPFPTLEEVAEISPTTCFENICNKPERGEDFTILQAIFSKDMALISLATFSGCGSSLAAIDNLGQIGESLGYPPRAISILVSWVSIFNFFGRVFSGFISENLIIKYRLPRPLTFAFAFLLTCIGQLCIAYPFPGSVYVASIVIGFGFGAQNPLLFAVISEMFGLKHYAILFNCGQLVVPIGSYILNVDIVGKLYDTEALREGRKMTGKGITCTGAHCFSGSFTILAVVTLFGALVMLVLAYRAREYYKWDVYKNCREDIWIPQEEMEFYRLDNRKNIDD 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2885199 2886932 - CcPI632755_03g002700.1 Cco03g0270 173629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0270 577 Pfam Major Facilitator Superfamily 347 540 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Cco03g0270 577 Gene3D MFS general substrate transporter like domains 340 570 IPR036259 -
Cco03g0270 577 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 15 552 - GO:0016020(PANTHER)
Cco03g0270 577 Pfam Nodulin-like 16 261 IPR010658 -
Cco03g0270 577 SUPERFAMILY MFS general substrate transporter 16 542 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0270 Cco-Chr3:2885199 Cco03g0272 Cco-Chr3:2895845 3.00E-202 dispersed
Cco03g0269 Cco-Chr3:2880957 Cco03g0270 Cco-Chr3:2885199 9.80E-259 tandem
Cco03g0270 Cco-Chr3:2885199 Cco03g0271 Cco-Chr3:2889862 1.40E-220 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0270 - - - 0.0