Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0271 ATGGCCGACAACTTTCTCCCCGAAACCTGCCGTTTCCTCAAACAACTTGGAGAAGGACGATGGTTTTCAGTATTCGCTTCTTTTCTAATCATGATCGGCGCAGGTTCAACTTACGTTTTCGGAACATACTCCAAAGTATTGAAAACCCAATTCGATTATAACCAAACCCAAATCAACACATTGGGATTTGCCAAAGATCTCGGCTCCAACCTCGGTGTTTTCGCCGGCCTTCTCGGCGAGGTGGCGCCGCCGTGGGTTCTGTTCATTGTCGGTTCATCTCTCAATTTCTACAGCTACTTCATGATTTGGCTCTCCATCACTCGCCGTATCGCCAAACCCAGTTTATGGAAGATGTTCTTCTACATTTCCTTAGCTGCCAATTCACAAAATTTCGCTAATACAGCCGTTTTAGTAACCAGCGTCAGGAATTTCCCTGATCGACGTGGAATTATTCTCGGACTTCTCAAAGGCTTTGTCGGAATCGGAGGTGCCATTTTAACTCAATTCTATTTAGCCATTTACGGCCATGAAAATCCAGCTAGTTTGGTTCTTCTTCTTTCATGGTTGCCCTCTTTTGTGTCTTTGGTATTTTGTCTCGTGATTCGAACAATCAATATCCGTAAACATCCTGAAGAACTCAGAGTTCTTTACCATTTGCTTTATGTCTCAGTAATTCTTGCTCTGTTTCTCTTATTTCTAACCATTACCCAAAAACAAGCTGAGTTTTCTTCAGCTGGGTATATAAGTGGAGCTGCCGTCATTGTTGGATTACTATCTATTCCTCTTTTAATCGCCATTAGAGAAGAACTCATTCTCTTCAAACTCAACAAACAAACCAACAAAAATCAACCCACCCCTGTTTTCGTTCCTGAACAAAAACCTTCATCAAATCCCCCACCTACCAACAATGATTCCTTAACCCCACTTGAGGAAATTTCAGAAACTGATTCGCCATCATGTTTCTCAAACATACTCAACAAACCAGAAAGAGGATCAGATTACACCATTTTACAAGCTCTGTTCAGCAAAGACATGGCGCTTGTTTTCGTAGGAACACTTTGTGGGTGTGGTTCATCACTTGCTGCCATTGACAACATAGGCCAAATTGGTGAATCACTTGGCTATCCATCTCAATCCATAAGCATCTTCGTTTCATGGGTTTCTATATTCAATTTCTTCGGCAGAGTAGGGTCTGGCTTCATCTCTGAAACTCTCATGACAAAATACAAATTACCTCGTCCTTTAATGTTCGCTTTCTCCCATCTTCTAACCTGCATTGGCATGCTCTTCATTGCCTTCCCATATTCCGGCTCAATCTACATAGCTTCATTGATCATCGGGTTCGGATTCGGAGCTCAAGTTCCGATGGTTTTCGCCATAATTTCGGAACTTTTCGGTCTGAAATATTACGCAACCATCTTCAATTGTGCACAATTGGCAGTCCCCATTGGATCCTATGTACTAAATGTGGATGTAATTGGGAGATTATATGATATTGAAGCCATAAAAGATGGGGGAATTAAGAATGGGAAAGGACTGACTTGCCATGGAATTCATTGTTTTAGTGGGTCATTCTTGATTTTGGCTGTGGTGGTGTTGATTGGAGCTTTGGCTTCGCTTGTGTTGGCTTTCAGGACGAGAGATTTTTACAGAGGGGATGTTTATAAGAAGTATAGAGAGGATATGTGGATTCCTCAATCCGATATGGAATTTTATTGTTTAGATAACAAGAAGAAAGTTGATAACAATTTGCAGCGGATTGTCATGCCGCCTAAATATAGTTTTCTCAATATAATATAG 1800 41.28 MADNFLPETCRFLKQLGEGRWFSVFASFLIMIGAGSTYVFGTYSKVLKTQFDYNQTQINTLGFAKDLGSNLGVFAGLLGEVAPPWVLFIVGSSLNFYSYFMIWLSITRRIAKPSLWKMFFYISLAANSQNFANTAVLVTSVRNFPDRRGIILGLLKGFVGIGGAILTQFYLAIYGHENPASLVLLLSWLPSFVSLVFCLVIRTINIRKHPEELRVLYHLLYVSVILALFLLFLTITQKQAEFSSAGYISGAAVIVGLLSIPLLIAIREELILFKLNKQTNKNQPTPVFVPEQKPSSNPPPTNNDSLTPLEEISETDSPSCFSNILNKPERGSDYTILQALFSKDMALVFVGTLCGCGSSLAAIDNIGQIGESLGYPSQSISIFVSWVSIFNFFGRVGSGFISETLMTKYKLPRPLMFAFSHLLTCIGMLFIAFPYSGSIYIASLIIGFGFGAQVPMVFAIISELFGLKYYATIFNCAQLAVPIGSYVLNVDVIGRLYDIEAIKDGGIKNGKGLTCHGIHCFSGSFLILAVVVLIGALASLVLAFRTRDFYRGDVYKKYREDMWIPQSDMEFYCLDNKKKVDNNLQRIVMPPKYSFLNII 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2889862 2891661 - CcPI632755_03g002710.1 Cco03g0271 173630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0271 599 MobiDBLite consensus disorder prediction 283 317 - -
Cco03g0271 599 Pfam Nodulin-like 20 266 IPR010658 -
Cco03g0271 599 Pfam Major Facilitator Superfamily 289 481 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Cco03g0271 599 Gene3D MFS general substrate transporter like domains 345 589 IPR036259 -
Cco03g0271 599 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 19 559 - GO:0016020(PANTHER)
Cco03g0271 599 MobiDBLite consensus disorder prediction 298 317 - -
Cco03g0271 599 SUPERFAMILY MFS general substrate transporter 22 548 IPR036259 -
Cco03g0271 599 CDD MFS_Mch1p_like 19 536 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0269 Cco-Chr3:2880957 Cco03g0271 Cco-Chr3:2889862 7.10E-217 dispersed
Cco03g0271 Cco-Chr3:2889862 Cco03g0273 Cco-Chr3:2901825 1.20E-206 dispersed
Cco03g0270 Cco-Chr3:2885199 Cco03g0271 Cco-Chr3:2889862 1.40E-220 tandem
Cco03g0271 Cco-Chr3:2889862 Cco03g0272 Cco-Chr3:2895845 1.20E-219 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0271 - - - 0.0