Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0274 ATGGGTACAACCACCGGTGCCGACCGTCCCCACGGCTATACAGCACTCCGATTCTCCTTGCAGGTGATTAAAGGACGGTGGTTCACCGTGTTCGCTACATTTCTGATCATGGCCGGCGCCGGCGCAACCTATCTCTTCGGTGTCTACTCCAAACAGATCAAAGCGACGCTTGGATATGACCAAACCACTTTGAATCTGATGGGTTTTTCTAAAGATCTGGGTGCTAATGTCGGTGTGCTGTCCGGTTTAGTGGCGGAGGTCACGCCGACTTGGTTCGTTCTCCTCCTTGGCTCCGCCTTGAACTTCACCGGATACTTCATGATTTGGCTTGCGGTTACCGGCAGAATTGCAAAGCCTCAAGTCTGGCAGATGTGTCTTTACATTTGCATTGGAGCGAATTCCCAGAATTTTGCTAATACTGGCGCTTTGGTTACTTGCATCCAGAATTTCCCCGAGAGCCGTGGAGCTATGATGGGGCTTTTGAAGGGCTTCACAGGGCTGAGCGGCGCCATTCTCACACAGATTTATTTGGCCGTCTATGGCGATGATGCCACGGCGTTGATCCTTCTTATTGGGTGGCTCCCGGCGGCGCTCTCCGTCGTTTTTGTTTTCACGATTCGGAGGCTCAGAACAGAGAGACAACCGAACGAGAAGAGGGTTTTTTACCATTTCCTTTATGTCTCAATCGGGTTAGCGCTTTTCATCATGCTTATGAATATTGTTCAGAAGAAAGTGGAATTCAATCATACGGCTTATGCTATGAGTGCTACTGTGGTTTGCGTATTTCTTTTCCTTCCTCTCTTGATTGTGATCCGGGAAGAGCTTCATCTCTGGAATGCAATGAAAAACCCCCCAATTCCCAACGAAAAGCCACAATCAAAATCTCAACCAAAACCAATTGATGAACCCAAAATCATCACCGAGGAATCAAAAGAAATCAAGGAAATCACAAACCCACCACCAGCGTCCTGTTTCTCCAACATTTGTCACAAACCAGCCAGAGGAGACGATTACACAATTCTCCAAGCACTTCTCAGCGTGGATATGTTGGTTCTGTTCATCGCAACATTCTGTGGATTAGGCACAAGCTTAACCGCAGTAGACAATTTAGGGCAAATCGGTGAATCACTCGGCTACCCATTAAAAACAGTAAAATCATTCGTTTCATTAGTAAGCATTTGGAATTACTTCGGCAGAGTATTCTCTGGATTCGTCTCTGAAACCCTTCTCGCAAAATTCAAATTCCCAAGACCTTTAATGATGACATTAGTCCTTCTTCTCTCTTGCATTGGCCAACTCTTAATCGCATTTCCAGTGCCAGGCTCCGTCTACATAGCCTCCGTCATCATCGGATTCTCCTTCGGCGCACAACTTCCCCTGCTTTTCGCCATAATTTCAGAGCTATTCGGACTGAAATATTTCTCCACTTTGTTCAATTGTGGGCAAATCGCGAGCCCGTTAGGATCGTATATTCTGAATGTGAAGGTCGCTGGAATGATGTACGACATGGAAGCTTTAAAGCAGCTGAAGGAGAAGGGGTTAGACAGATCGGCGGTGAAGGAATTGACTTGCATTGGAAAGCAATGTTTCAGGAAATCGTTTACGTTAATGGCGATTGTTACCTTTGTTGGAGCTATGGTTTCACTGGTTTTAGTGATGAGAACAAGGGAGTTTTACAAAGGGGATATTTACAAGAAATTTAGAGACGAAGAACTGAAGGAGGAAGCCACCGGAGCAGAGGTTACTGCTCGGGAATCCAAGTAA 1764 46.26 MGTTTGADRPHGYTALRFSLQVIKGRWFTVFATFLIMAGAGATYLFGVYSKQIKATLGYDQTTLNLMGFSKDLGANVGVLSGLVAEVTPTWFVLLLGSALNFTGYFMIWLAVTGRIAKPQVWQMCLYICIGANSQNFANTGALVTCIQNFPESRGAMMGLLKGFTGLSGAILTQIYLAVYGDDATALILLIGWLPAALSVVFVFTIRRLRTERQPNEKRVFYHFLYVSIGLALFIMLMNIVQKKVEFNHTAYAMSATVVCVFLFLPLLIVIREELHLWNAMKNPPIPNEKPQSKSQPKPIDEPKIITEESKEIKEITNPPPASCFSNICHKPARGDDYTILQALLSVDMLVLFIATFCGLGTSLTAVDNLGQIGESLGYPLKTVKSFVSLVSIWNYFGRVFSGFVSETLLAKFKFPRPLMMTLVLLLSCIGQLLIAFPVPGSVYIASVIIGFSFGAQLPLLFAIISELFGLKYFSTLFNCGQIASPLGSYILNVKVAGMMYDMEALKQLKEKGLDRSAVKELTCIGKQCFRKSFTLMAIVTFVGAMVSLVLVMRTREFYKGDIYKKFRDEELKEEATGAEVTARESK 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2909989 2911752 - CcPI632755_03g002740.1 Cco03g0274 173633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0274 587 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 25 568 - GO:0016020(PANTHER)
Cco03g0274 587 SUPERFAMILY MFS general substrate transporter 26 557 IPR036259 -
Cco03g0274 587 Pfam Nodulin-like 26 271 IPR010658 -
Cco03g0274 587 FunFam Nodulin family protein 340 561 - -
Cco03g0274 587 CDD MFS_Mch1p_like 25 545 - -
Cco03g0274 587 Gene3D MFS general substrate transporter like domains 344 560 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0261 Cco-Chr3:2837047 Cco03g0274 Cco-Chr3:2909989 9.20E-175 dispersed
Cco03g0264 Cco-Chr3:2852638 Cco03g0274 Cco-Chr3:2909989 9.70E-22 dispersed
Cco03g0272 Cco-Chr3:2895845 Cco03g0274 Cco-Chr3:2909989 2.70E-158 dispersed
Cco03g0274 Cco-Chr3:2909989 Cco05g2390 Cco-Chr5:32381704 3.00E-194 dispersed
Cco03g0273 Cco-Chr3:2901825 Cco03g0274 Cco-Chr3:2909989 3.10E-151 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0274 - - - 0.0