Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0290 ATGGAGAAATCTGGATATGGTCGCGATGGAATTTTCAGGTCTTTACGGCCTCCGCTCGTCTTTCCTAAAGATCCCAATCTCTCGATGATCTCTTTCCTCTTCCGAAATTCGTGTTCTTATCCAAATAGACTAGCCATTGTGGATGCGGAATCTTCTGATTCTGTGTCGTATTCACAACTTAAAGCCTCTGCAATTAGGGTCTCCAATGGGTTGATCCAATTGGGTATCGAGAAAAACGACGTGGTGTTGATTTTTGCTCCAAATTCAGTTCAGTTTTCCATTTGTTTCATTGGGATTATTGCTATTGGGGCCATTGTAACCACTTGTAATCCTGTTTACACGGTCTCTGAGCTAACCAAGCAAGTTAAAGATGCTAAACCCAAACTTGTGATATCTGTTGCTGAATTGTGGGACAAAGTGAAGGATCTAAACATCCCAACTGTGTTACTGGACCAGCAGATTCCTTCAGCAATTCACTCTTCCAAAATATTATGTTTCAATGATTTGATGAACATGGCTGGTGATAAATCTGGGTCTGAGTTCCCAATTGTTGGGGTGAAACAGAGTGATACAGCTGCACTTCTGTATTCATCAGGAACAACAGGAGCTAGTAAGGGTGTGATTCTGACTCATAGAAACTTCATAACGTCTTCATTGATGATTACAATGGATCAGACGTTTAGGGGAGAGGAACATGGCGTATATCTGAACTTCTTGCCAATGTTTCATGTGTTTGGATTGGCTTGTATAACATATGCGCAGCTGCAGAAAGGAAACAGCATTGTCTCTATGCCAAAGTTTAACCTGGAGAAGGCCTTGTGGGCAGTGGAGAAGTACAAGGTGACAGATATGTGGGTTGTGCCGCCTGTTGTGCTTGCTTTAGCAAAGCAGAGTGTGGTGAAGAAGTACAACCTTTCATCTGTGAAGCGTGTTGGTTCTGGGGCTGCACCTCTCGGGAAGGAATTAATGGAGGAATGTGCTAATAACATTCCCAGTGCTGTGGTTCTCCAGGGTTATGGTATGACTGAGACTTGTGGAGTTGTTGCTTTGGAGAATCCAGAAGTTGGCAAACGAAATTCTGGTTCAGCTGGAACACTTGCCTCTGGTGTGGAGGCTAAAATAGTCAGTGTAGATACTTTGAAGCCTCTACCTCCTAATCAATATGGAGAGATACATGTTCGGGGACCAAACATGATGCGGGGTTATTTCAACAATCCAGAAGCCACCAAGCAAACTATTGATAAATATGGCTGGGTGCATACTGGAGACCTTGGATACTTCGATGAAAATGGTCAGCTTTATGTTGTCGACCGAATCAAGGAACTCATCAAGTACAAAGGTTTTCAGGTTGCTCCAGCTGAGCTTGAAGCACTGTTGGTTTCTCACCCTGAGATACTAGATGCTGTTGTCATCCCCTACCCTGATGCTGAAGCTGGAGAAGTTCCAATCGCATATGTTGTTCGATCTGCCAATAGCTCTTTGACCGAAGAGGACATCCTTAAATTCATTGCTGATCAGGTTTCTCCTTACAAAAGGTTAAGAAGAGTGACATTCATCAGCAGTGTTCCCAAGTCTGTTTCTGGGAAAATCCTCAGGAGAGAACTCATTGAAAAAGTAAGAGCTAAAATTTAA 1632 43.08 MEKSGYGRDGIFRSLRPPLVFPKDPNLSMISFLFRNSCSYPNRLAIVDAESSDSVSYSQLKASAIRVSNGLIQLGIEKNDVVLIFAPNSVQFSICFIGIIAIGAIVTTCNPVYTVSELTKQVKDAKPKLVISVAELWDKVKDLNIPTVLLDQQIPSAIHSSKILCFNDLMNMAGDKSGSEFPIVGVKQSDTAALLYSSGTTGASKGVILTHRNFITSSLMITMDQTFRGEEHGVYLNFLPMFHVFGLACITYAQLQKGNSIVSMPKFNLEKALWAVEKYKVTDMWVVPPVVLALAKQSVVKKYNLSSVKRVGSGAAPLGKELMEECANNIPSAVVLQGYGMTETCGVVALENPEVGKRNSGSAGTLASGVEAKIVSVDTLKPLPPNQYGEIHVRGPNMMRGYFNNPEATKQTIDKYGWVHTGDLGYFDENGQLYVVDRIKELIKYKGFQVAPAELEALLVSHPEILDAVVIPYPDAEAGEVPIAYVVRSANSSLTEEDILKFIADQVSPYKRLRRVTFISSVPKSVSGKILRRELIEKVRAKI 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3148328 3151014 - CcPI632755_03g002900.1 Cco03g0290 173649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0290 543 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Cco03g0290 543 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Cco03g0290 543 FunFam 4-coumarate--CoA ligase 2 441 542 - -
Cco03g0290 543 Gene3D - 441 542 IPR045851 -
Cco03g0290 543 CDD 4CL 21 535 - -
Cco03g0290 543 Pfam AMP-binding enzyme 39 403 IPR000873 -
Cco03g0290 543 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 440 - -
Cco03g0290 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 535 - GO:0016405(PANTHER)
Cco03g0290 543 Gene3D - 10 440 IPR042099 -
Cco03g0290 543 SUPERFAMILY Acetyl-CoA synthetase-like 17 541 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0468 Cco-Chr1:4568614 Cco03g0290 Cco-Chr3:3148328 4.80E-50 dispersed
Cco03g0290 Cco-Chr3:3148328 Cco10g1993 Cco-Chr10:33441764 1.20E-192 dispersed
Cco03g0290 Cco-Chr3:3148328 Cco05g1735 Cco-Chr5:25701367 8.10E-125 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0290 K01904 - csv:101220141 1009.59