Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0301 ATGCTGTCTGTGTATGAGCTTCCGCCACTGGCTCGGCACGTGAAGGAGGCATTTTTCGTTCTGCATTGTGGAATTTCGCACTGTTCATCTTGTGTTATGGATAATTATTGGCTAGTTATCACCGGCTTTAGAGGTCCAAACGTCAGCTTCAACTTGCTCCCGGCTTTGATGGTAAATAAGATATTGCTTTTTATGATTTATCGCAATATGCATGTTGCTCAACAAAGTCGGCGCGATAAGTTAAGAGTTCCGCAGAATTATTTGCGAGTGGGGGAGTTATCAAGGAACTCTGATGAACAATTGAATTTTCACAACTCCGAGCATTTGGGGCTTGATCTGGATCTTGTTAGAATTCAAAGTTATAACAAGGATGCGATTTTGACTCATGATCACTTGTCTTCGTTACCCTCAGAAATGATCAATTTCTCGAGAGATTCCAATGTTTTATCGCACCAAAGGGACATGATGTTGCGTCAAGAATTGGAAGACCCAGCTCAATGCAGTAGACAAATTGTGACAGATGCCTCTGGTGGAATTGTAAATAATGGTGTTGATTATTGGAAAAGCTCTCATCAAAGCTGTGATTGGGTGGTGAACTGTGGAAGTAATTCTTTTGGAGGTGAAATGTTGAATCAGGAAGTAACTGATTCTACAGTGTATTCACTGAAGCCAACTTGCATTGGATTCCAAACTTCTTCCTCTTTTAATAATCCATCCAACGAGACATTCAATCAGGATGGACAAAAGCGTATAGGAGGAGAATTGCATTTGCCTCCAATTTACCAAAATACCCTTCAGGACGTTGTTACATCCGCCTCCATTCGAACTCAGGGCCTGGAAATGGCATCCATTGTGCAGCATAATTTCACTGAAATTAACCAAACTGCTGCTTGTGAAGGCAGTGGCAATGAGCTTGCTCTTCTTCCAGTGTACAGGGATCAGCCAAATGTGTTGCCTTATGACAGTACTGGTTCTTGGACTGATAGAACTTTCTATAATTGCCGCAGCTGGATTGGTGAGTTGGGCTCTATTGCTAGAAAAACCGATGAAGAGTTAAGGACTTTTATGAGTGATTCCAATCCACAAGGTCTATCCCTGTCGCTGTCTTCGAATCCGCCGTCTAAATTGCCCACCACACAGTTCATAGAATCAGAGGAATTACAGGAGAGTATCACTGTGTTAAAAAATACCCAAGAATCCAAAACAGTCAAATCTGAGAATTTGTGTAGATTACCAAAGCCAACATCTATTGGTAATAAAAATTATGGGAAATCTCTTCAAGATGTGATGGGAGTTCCTGTCAATCCATATAGAAACACAGGTCCTCTTGGTCCCTTTACTGGGTATGCAACCATTTTAAAGAGTTCAAAATTCTTAAAGCCTGCCCAACTGCTGTTAGATGAATTTTGTGGCTCAAGTGGTCATTATAAGTTTGTCCGACCATGTGAGGTATTTGAGAAGACACCTGGGGAAGTTGGTGTCTCAGCGGCCCTTAATGCATTTAGAAATGAGGCTGTTAAGGAAAATAGTTCATGTGCAGATGCCTCTACATTCTGCGGTTCGAATGAATCAAATGTTAGTGGAGTTGGGAGCATCTCTTCTGAATCTCATCAACCGGAGTATCAGCAAAAGAAAGCAAAACTTCTATATATGCTCGAGGAGGTTTGCAGAAGATACAAACAATATCATCAGCAAATGCAAATGGTAGTTTCATCCTTCGAATCAGTAGCTGGTCTTAGTTCTGCGACACCCTACATTTCCCTGGCACTCAAGACAGTCTCAAGACACTTCCGGTCTCTGAAGAATACCATCTCGGAGCAACTGAAGTATCTGAGGAAGGTACTTGGTGAGGATTTGTCATCCCCCTCTGCTGGGACAAGCGGCAGCAAAGGTGGTGATGCAAATTCGGTTAGGTTGAAATACATGGAACAGAGCTTCCAGAAGCAAAAATCTGGCATTGTCAATATTGGATTCCTTGAATCCCAAAATGCATGGAGGCCACAGAGAGGGTTGCCTGAACGTGCTGTGGCAATTCTTAGAGCCTGGCTCTTTGAGCATTTTCTTCACCCATACCCCACAGACACAGATAAACACATGTTGGCCACTCAAACAGGCCTATCTCGAAACCAGGTGTCAAATTGGTTCATAAATGCCCGAGTGCGGGTGTGGAAGCCAATGGTTGAAGAGATACACATGCTAGAAACCAAGGGCATGGCAGAAATGAACAACAAAAGCCATGGTATGAGAGATGGAAGTTCTACATTAGAGAAGACTGCCGGTTGGACCAGTAGTGAACGCCGGCCTCTAAAAAACCACAGTGTTACAAATGAAATGGCTAGTCATCATTTGCAGTGCTTGGGGGTAGATTCCTCAAGTGGCGACAGAAATGGACTCGGCTGCAGCGACCAACAGTGGGATCAAGGCAAACAATCCAAATTGGACAATGGGGTTCAGTCCAACATGGAAGGGGAACTGATGGGGTTCGTGCCATATCAAGCCAGTGCAGCTGAGGTTGGAGGACTTGGAGCTGTCTCTCTAACATTAGGCCTTCGCCACCGGGTCGAGAGTGCCCACCATGAACAGCAGCGGCATCAAATGCAGCAACAAGATGACCAACTAATACGCCACTATGGAAACGAAATGATCCATGATTTTGTGGGTGCCTTGACGGTTAAGTTACATTGCGTGGGGAGGAGCCCAAGTCGCTGTTCGAGGGTTCAGAAAGTTGAAACAGCTCTCGGCAATCTCTCCATATCTCAGATGAAAAAACCTGTTATGATGTTGCTTCTGAAAGAACAATACACTCTTTTGAAAAGAGCATTCTACAATGAGCAGAGACGCATTGGTGATAACTTCAGCGGCTATAATGAATATATTCTCTTCGGCTTTTCTGTGCACCATGTCCCAGACATTATTCGTAACTTCCATCCCACTAGTGCTGAAGAGATTCCTTTGCCGGCTAATCTGAGTGTTCCTGATGGGGGTCTGTTGATTCCATGTCAATTGGGTACTTGA 3015 43.85 MLSVYELPPLARHVKEAFFVLHCGISHCSSCVMDNYWLVITGFRGPNVSFNLLPALMVNKILLFMIYRNMHVAQQSRRDKLRVPQNYLRVGELSRNSDEQLNFHNSEHLGLDLDLVRIQSYNKDAILTHDHLSSLPSEMINFSRDSNVLSHQRDMMLRQELEDPAQCSRQIVTDASGGIVNNGVDYWKSSHQSCDWVVNCGSNSFGGEMLNQEVTDSTVYSLKPTCIGFQTSSSFNNPSNETFNQDGQKRIGGELHLPPIYQNTLQDVVTSASIRTQGLEMASIVQHNFTEINQTAACEGSGNELALLPVYRDQPNVLPYDSTGSWTDRTFYNCRSWIGELGSIARKTDEELRTFMSDSNPQGLSLSLSSNPPSKLPTTQFIESEELQESITVLKNTQESKTVKSENLCRLPKPTSIGNKNYGKSLQDVMGVPVNPYRNTGPLGPFTGYATILKSSKFLKPAQLLLDEFCGSSGHYKFVRPCEVFEKTPGEVGVSAALNAFRNEAVKENSSCADASTFCGSNESNVSGVGSISSESHQPEYQQKKAKLLYMLEEVCRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKTVSRHFRSLKNTISEQLKYLRKVLGEDLSSPSAGTSGSKGGDANSVRLKYMEQSFQKQKSGIVNIGFLESQNAWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGMAEMNNKSHGMRDGSSTLEKTAGWTSSERRPLKNHSVTNEMASHHLQCLGVDSSSGDRNGLGCSDQQWDQGKQSKLDNGVQSNMEGELMGFVPYQASAAEVGGLGAVSLTLGLRHRVESAHHEQQRHQMQQQDDQLIRHYGNEMIHDFVGALTVKLHCVGRSPSRCSRVQKVETALGNLSISQMKKPVMMLLLKEQYTLLKRAFYNEQRRIGDNFSGYNEYILFGFSVHHVPDIIRNFHPTSAEEIPLPANLSVPDGGLLIPCQLGT 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3333136 3343449 + CcPI632755_03g003010.1 Cco03g0301 173660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0301 1004 SMART prehox3 447 606 IPR006563 -
Cco03g0301 1004 SUPERFAMILY Homeodomain-like 666 731 IPR009057 -
Cco03g0301 1004 CDD homeodomain 665 726 IPR001356 GO:0003677(InterPro)
Cco03g0301 1004 Pfam Homeobox KN domain 682 721 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco03g0301 1004 Gene3D - 668 730 - -
Cco03g0301 1004 MobiDBLite consensus disorder prediction 742 767 - -
Cco03g0301 1004 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 375 756 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco03g0301 1004 SMART HOX_1 665 729 IPR001356 GO:0003677(InterPro)
Cco03g0301 1004 MobiDBLite consensus disorder prediction 358 377 - -
Cco03g0301 1004 FunFam BEL1-like homeodomain protein 9 668 730 - -
Cco03g0301 1004 ProSiteProfiles 'Homeobox' domain profile. 662 725 IPR001356 GO:0003677(InterPro)
Cco03g0301 1004 Pfam Associated with HOX 452 605 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0301 Cco-Chr3:3333136 Cco04g1384 Cco-Chr4:29223308 1.60E-62 dispersed
Cco03g0301 Cco-Chr3:3333136 Cco10g2138 Cco-Chr10:34601680 3.30E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58900 PF07526 POX 4.90E-42 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0301 - - - 0.0