Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0315 ATGAGTGCTCCTATGGAGATTTCTTTGCCAAACCCTCCCTTAGAAGCCCAGTTGTCTGAATCAAATGGCGTCGTCTCCGAATCAGCTGCTTCTCCGATTGTAAATGAAGACAAAATTCTCGTTTCAGTCGAGGTGTGCTTAAAATCCTCCAGCACAGCGCGGATTGAAGATGTCCGGTTGGCCGTTGAGAGAATGCTTGAGAAGAGAAGTTTAAGCTATGTTGATGGGCCCATTCCAGTGCCGCTCGATGACGCTTTTCTCGCTGACAATGTGCAAGGAATCCGAATTTGCGACTCTGATGACGGTGTGCAAAACCATGATATCCTCTTATTCTGGCAAGTCAAACCTGTTGTTCATGTCTTTCAGCTTAGTGAAGAAGGACCCTGCGAGGAACTTGGTGGGGATGGGCAGATTTCTAGCTTTAATGAATGGATACTTCCTGCCAAGGAGTTTGACGGCATGTGGGAAAGTTTAATTTTTGAGTCTGGTCTCAAGCAAAGGCTTCTGCGATATGCTGCTAGTGCTTTGTTATTCACTGAAAAGGGTGTTGATCCATTCCTAGTGTCATGGAATCGGATTGTCCTATTACATGGACCTCCAGGGACCGGTAAGACCTCTTTATGCAAAGCACTGGCTCAAAAACTGTCAATAAGATATCTTTCAAGATACCCACACAGCGTACTCATTGAAGTTAATGCACATTCCCTTTTTAGCAAATGGTTTTCTGAAAGTGGCAAGTTGGTCGCAAAGCTATTCCAGAAGATTCAAGAGATGATAGAGGAAGAAGACAATCTGGTATTTGTTTTGATTGATGAAGTGGAAAGCTTAGCTGCTGCTAGAAAGGCTGCTTTGTCTGGTTCAGAACCTTCAGATTCCATTAGGGTTGTCAATGCGCTACTTACACAGATAGACAAGTTGAAATCGTCACCAAATGTGGTGATTCTGACAACTTCCAATATAACAGCAGCTATTGATATTGCATTTGTAGATCGAGCAGATATCAAAGCATATGTTGGTCCACCAACTCTTCAAGCACGTTATGAAATTCTAAGGTCCTGCTTGCAAGAGCTTATACGCACTGGAATTTTGACAACTTCTGAGGGTTGTGACCACTCTATGCTTCCTAACTATGCTGGTTTGAAAGAGAAAATAAGCATTTCAGAGACTGAGAAGGTTGAAGAACCACTTCAAATCTGCAAACTATTGCTTAAGGTTGCTGAAGCATGCAAGGGTTCTAGTGGACGTTTTTTAAGAAAGCTCCCATTCTTAGCTCATGCAACTCTAGCCAATCCATGTACTGGCGACCCTTCAAAGTTCTTAAACATCTGCTTCTTCTGTCTGCTATCTCGGCATCTCGACATGTTTCTTGCTTTCAACAACACTTCAAGGACGAAGCCAATGAACATTCTTGCTGCTATAGAGATGCCACAGAGAGGTTTCTCTTTCTTGCAGTCTTTTGAAATGGGAAGCTTTGTTTTGGTGGTTCGAAAATTTAGACAACCTTGTCTCTCCACCAGTGTGCGGGTGGGATCTGATCAGAATCAAGCTATGGAGTTCAATTTTTGGGCCGCAAGGGTTCATCCCACTGACCAACTTTCTGCTGTCCAAGCCGCCATGCTTCATTCTGGTAACCATATAATTCTGGATGACTCAGATGGAGAAGATGATTCACGAGCTTACTTTTCATGCCCTTACTGTTATTTGGATATCGAAGTTCCAGTTCTTTGTAGCCATTTGCAAGAAGAGCACTGCTTTGACTTCAGAAATGCAGTTTGTCCCCTATGTGCAGCCAGTCTAGGGAAAGATGTAATTGGGCATTTTACAGCACATCATTCAAGCTCAATAAAGAGGAGGAGAAAACCTGAGAAATCTGTTTCTTCTGCATTTAGTTCCAAGAAGCTGATAACAAAGAGCAGGGAAAAAAGAAATGGATCTGCACCCGATCCCCTTCTACCCTTTATCTGCAGCATTCCTTTCTCAGACCCTGAATTTGTCGAGAGAGATGACCGTTCAGAAAACGCCTCCATTGCTACTAATATTGGAAGTAATAGGTCACAGTTGCTGGAAAGAAACCAGAACAGTGAAGAGTTGAATCAGAGAGCATCTTTTGTACAACAATTAATCACATCAACCATTTTTTAG 2142 42.81 MSAPMEISLPNPPLEAQLSESNGVVSESAASPIVNEDKILVSVEVCLKSSSTARIEDVRLAVERMLEKRSLSYVDGPIPVPLDDAFLADNVQGIRICDSDDGVQNHDILLFWQVKPVVHVFQLSEEGPCEELGGDGQISSFNEWILPAKEFDGMWESLIFESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRYLSRYPHSVLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMIEEEDNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQIDKLKSSPNVVILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELIRTGILTTSEGCDHSMLPNYAGLKEKISISETEKVEEPLQICKLLLKVAEACKGSSGRFLRKLPFLAHATLANPCTGDPSKFLNICFFCLLSRHLDMFLAFNNTSRTKPMNILAAIEMPQRGFSFLQSFEMGSFVLVVRKFRQPCLSTSVRVGSDQNQAMEFNFWAARVHPTDQLSAVQAAMLHSGNHIILDDSDGEDDSRAYFSCPYCYLDIEVPVLCSHLQEEHCFDFRNAVCPLCAASLGKDVIGHFTAHHSSSIKRRRKPEKSVSSAFSSKKLITKSREKRNGSAPDPLLPFICSIPFSDPEFVERDDRSENASIATNIGSNRSQLLERNQNSEELNQRASFVQQLITSTIF 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3510489 3522782 + CcPI632755_03g003150.1 Cco03g0315 173674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0315 713 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 308 322 IPR001270 GO:0005524(InterPro)
Cco03g0315 713 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 194 212 IPR001270 GO:0005524(InterPro)
Cco03g0315 713 Pfam ATPase family associated with various cellular activities (AAA) 194 339 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco03g0315 713 Pfam Drought induced 19 protein (Di19), zinc-binding 560 612 IPR008598 -
Cco03g0315 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 420 IPR027417 -
Cco03g0315 713 CDD RecA-like_Pch2-like 140 338 - -
Cco03g0315 713 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 35 441 IPR044539 GO:0005634(PANTHER)|GO:0005694(PANTHER)|GO:0007131(PANTHER)|GO:0051598(PANTHER)
Cco03g0315 713 ProSitePatterns AAA-protein family signature. 312 331 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco03g0315 713 SMART AAA_5 190 342 IPR003593 GO:0016887(InterPro)
Cco03g0315 713 FunFam pachytene checkpoint protein 2 homolog 134 356 - -
Cco03g0315 713 Gene3D - 139 357 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0315 K22399 - - csv:101207135 825.854
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0315 Cco-Chr3:3510489 Cco04g1951 Cco-Chr4:33819785 2.90E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g830 . . . . . . . . Cmo13g00891 . . . . . . Cpe20g00264 . . . . . . . . . . . . . . . . . Cone13ag0175 . Lsi02g00414 Csa01g00885 Chy12g01238 Cme12g01661 . . . . . . . . . . . Cma13g00860 . Car13g00702 . . . Bhi08g01662 Tan05g1968 Cmetu12g1001 Lac10g0493 Hepe07g2197 . . Cla03g00289 Cam03g0307 Cec03g0301 Cco03g0315 Clacu03g0308 Cmu03g0918 Cre03g0609 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012252 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 29