Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0316 ATGTCTCAGGATTTGTCATTGGATCAAGACCTGGATGAATCTGATCCTGAGTTCGTCGAGATTGATCCTACTGGTCGATATGGAAGGTATAAAGAAATTTTGGGCAAAGGGGCATTCAAAAGGGTATATCGGGCTTTTGATGAGTTGGAAGGGATTGAAGTAGCTTGGAATCAGGTTAAGGTAACGGATCTATTGCGAAACTCTGAAGATTTGGAGCGACTTTATTCAGAAGTTCATTTGCTTAAGACATTGAAGCACAAGAACATAATCAAATTTTACAATTCATGGGTTGATACGAAAAATGAGAACATTAACTTCATTACTGAGATATTTACTTCAGGGACACTACGACAATATAGAAAGAAACACAAGCATGTTGATTTGAGAGCATTGAAAAAGTGGTCCAGGCAGATATTAGAGGGCCTTCTATATCTTCATAGTCATGACCCTCCAGTTATACATAGAGATTTAAAATGTGACAATATCTTTGTAAATGGCAACCAAGGTGAGGTGAAAATTGGTGACTTAGGACTTGCCGCCATTCTTCAACAAGCTCGTTCAGCCCACAGTGTCATTGGGACACCCGAATTTATGGCTCCGGAGCTGTATGAGGAGGAATACAATGAGCTTGTGGATATTTATGCCTTTGGAATGTGTTTGCTTGAGCTTGTAACCTTTGAATATCCATATATTGAATGTGCAAATGCTGCTCAAATCTATAAGAAGGTCACATCAGGGATTAAACCAGCTTCATTGGCAAAAGTCACTGATTTAGGAGTGAAAGCATTTATAGAAAAATGTATTGCAAATGTCTCTGATCGTTTACCTGCAAAAGATCTTTTAAAAGATCCATTTCTCCAAGCAGATGATGATCATGAAAGTGCATCTCGTCATTTACAATCAAAGACCCTTCATGCAGGAAAAAGAGAGCAAATTGATTTTGATCGAAGTGTAGATGATACTTCTGTTGAGACAAGCAGAGATTTCAGTATGCATGGCGAGAGGAAAGATGTTAACAAGATATTTCTCAAACTACGAATTGCTGATTCTATGGGTAATTATCGCAATATCCATTTCCCATTTGATATTGAAGCCGACACAGCAATTTCTGTTGCTAGTGAAATGGTGGAGGAGTTAGACCTTTCTGATCAAGATGTCTCCACAATTTCGGAAATGATTGAAACAGAAATTCGATCTTACATTCCAGATTGGATATCAGTTGAGTACTCTGGAGATAATGTAGGTGCTGATGTTGCAATTTCTGATAGCTCTCCTTCTGAAACAAGGAATGCTGCCTCTCCATTGTCTATGGAATCTGGTAATCTTGCATTAGAGGTTATGCCTTCAGGTCGCAAGTATTGGTCAGACTCTCCAAAGGGAATTGGTGGATGTTCTCCTATTAAGCCAGGTCCTTCAAACTTGTCTTTTACCTTAGATCAAAATGTTGAATCCTCCAACACCCCCATACATGGGGACAATCTAGACCATGCTGCCATAATTAAGGGATTGGAAAGTGAGCTTTTGTTAGAGGGCGGTGATCATGATGGACAGGATGAGGATAACTCAACTACAAATATTCATGCTAGCTCTGAAGCACATTTTTTAGAAGAGAACAATTATGATGAATCAGTTGACCTTGAAATAATAGCTGAGAAACTTGAAATTTTGTTGACACAACAACAAAAGGAATTAGATGAACTAAAGAAAAAGCATAAATTAGCTATTTCAGAACTTTTGACTAAACTTGCACCTGAGTCCTATCAGAAGCATGATGTTGAAGATGGTAAGGAGTGGCCAATGGATGGATTGCAAAGCTATAAACTGATATCGGCATCCCTTCCGGGTGATGGGACTGATCAATACTTGTAA 1869 38.68 MSQDLSLDQDLDESDPEFVEIDPTGRYGRYKEILGKGAFKRVYRAFDELEGIEVAWNQVKVTDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYIECANAAQIYKKVTSGIKPASLAKVTDLGVKAFIEKCIANVSDRLPAKDLLKDPFLQADDDHESASRHLQSKTLHAGKREQIDFDRSVDDTSVETSRDFSMHGERKDVNKIFLKLRIADSMGNYRNIHFPFDIEADTAISVASEMVEELDLSDQDVSTISEMIETEIRSYIPDWISVEYSGDNVGADVAISDSSPSETRNAASPLSMESGNLALEVMPSGRKYWSDSPKGIGGCSPIKPGPSNLSFTLDQNVESSNTPIHGDNLDHAAIIKGLESELLLEGGDHDGQDEDNSTTNIHASSEAHFLEENNYDESVDLEIIAEKLEILLTQQQKELDELKKKHKLAISELLTKLAPESYQKHDVEDGKEWPMDGLQSYKLISASLPGDGTDQYL 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3523355 3527774 - CcPI632755_03g003160.1 Cco03g0316 173675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0316 622 CDD STKc_WNK 26 286 - -
Cco03g0316 622 FunFam Probable serine/threonine-protein kinase WNK1 12 109 - -
Cco03g0316 622 Coils Coil 550 577 - -
Cco03g0316 622 SUPERFAMILY Protein kinase-like (PK-like) 30 287 IPR011009 -
Cco03g0316 622 Gene3D - 339 404 - -
Cco03g0316 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0316 622 FunFam probable serine/threonine-protein kinase WNK9 111 291 - -
Cco03g0316 622 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 575 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cco03g0316 622 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 343 397 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Cco03g0316 622 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0316 622 SMART serkin_6 28 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0316 622 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Cco03g0316 622 Gene3D Transferase(Phosphotransferase) domain 1 111 293 - -
Cco03g0316 622 Pfam Protein kinase domain 31 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1766 Cco-Chr2:30431794 Cco03g0316 Cco-Chr3:3523355 4.60E-139 dispersed
Cco03g0316 Cco-Chr3:3523355 Cco05g0080 Cco-Chr5:706460 7.30E-138 dispersed
Cco03g0316 Cco-Chr3:3523355 Cco06g0628 Cco-Chr6:6951084 3.20E-141 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86636 PF00069 Pkinase 1.20E-49 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0316 K08867 - csv:101206177 1046.96