Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0317 ATGGAATTCAGAAAGAGCAGAGAGAATTCGAGAGATATGGCAAAATTAGGGCAAAAGAGAGTTACAAGTTCTCGGCCCAAGCCTCATCAGCAGGCTCCCGATCTGACGGATTTTATGAACGACATGTTCTTTGGGGCCGTAAACAAGGACAAGAAAGCCTATAATTTGACTGGAAATGAAGATGATGAAGAAGAAGAAGAAGAATCGTTTGATCGGAGCAATAGAAGTAGAAATGAGCAATTGACGGAGGAGTGGTTGGATGAGGCACGTCGGTTGGTGGCTTCTTCACCCTCGCGGTGTAATTCGCCGGCTCGGCTTGCTGGATCGCCGAGGTTTGCGGCGGCCAATGGCAGATCTCCGGCGTCGATTATTGATCGGAGAGATCCACTCTCAAGGTCCGCCAGAAGGCACAGAGCTGTGGACAACTTCAGTGGTGAGATCCTCTCCAAAGTCGTCCGACACAGCCGCAACAAATCGGAATCCTTTTCAGCCTCCTCCACCGCCGTGGAGGAGCCGATAAATCCTGCTTCGGCCGTTCAAAAATGGATCTCCAACATCCTCAAACCACCCTCCAATCCCGTCATTTCCATCCCCGATCCTCCTCCTCCTTCCACTCCTCGCAAATCTCGATTCCACACCGATCTTCCCCCTTCTCGCCTCCCAATTCCTCCCTCAGATGCCCTTCTTTCTCCGCCTAAAACCCTAACTGATCTGCCGCCTAGACGAACGGTCTCATCGCCGGCTTTTTCACTTCAGACGATTAGACCCAAATCCAATCTAAATGGGTTTTCGAGGGGCGACTCTGGCGATTTGGAGTTTGGTCTTAATGGGTTTCTCAAAGAACAGCGGAGCAAGATTCAACAAATCTCAAACGGGGAGCTCGATGCCGAAGTTAAAATCATTCTCTCTGGGCCTTCAAATAGCACTAGTTCAATGGTGGCAGCAATTTGCTATGCTTGGTTACTTGAGAACAAAATGAGGCAGAGTAGCGTCGAGACCGGTCGAGAGTGTCTCGTGGTTCCTGTGATGAATATGCAGAGGGGAAAGATGTGGAACCAACGGCAGGTTGCTTGGCTCTTTTATCACCTTGGACTTGATGCTTCCTCAATCCTTTTTACTGATGAGGTGGACTTAGAAAATCTGATGATAGCTGGTCGAACTAGCATCCTTGTGGTAGGGCAAGATGTTCTTAAGATGAGTGATGGGGTTGGCTCTCAGTGCACCATTCTTACAGATAACTATTGTGAAGATGCCTATCATTTACTTCAAACCCCATTGTTGAAGAATCTTTTGCTTGCAGGAATCCTGTTGGACACGAAAAATCTCGATGCATCTTCTCAATCATCCATGACAAGAGATGCAGAGGCGGTTCAGTTGCTATCGGTTGGCTCAGGCCTAACTTCTAAGAATGGACTTTATGATCAACTGATGCGTGTTCAAAAGGAAAGTGCATTTTTGGATGCCTTGATACAAAATTATGGAAAGCCTCCCAATGATGGTAGCAACAACGGTGTGGGGCGTTCGGAGCGTATCAAGGAGAGGAATCAAGCATCAATCTCACCCCATGGTGATGCAATTAATCAACAAAAGATATCTAATGATTTTGGAACTGCCAAAACTGGCAGGGTTTCTCCAAAATCCGCTAAACCCAATTCATTACCTTTTCAAACACCAACTAGAGAAGCTTCCAACCCATCTCGTGGAAAGAATAAAAATTTCTTGGCAAAATGGTTTGGTTTTGGATCAAAATGA 1752 46.86 MEFRKSRENSRDMAKLGQKRVTSSRPKPHQQAPDLTDFMNDMFFGAVNKDKKAYNLTGNEDDEEEEEESFDRSNRSRNEQLTEEWLDEARRLVASSPSRCNSPARLAGSPRFAAANGRSPASIIDRRDPLSRSARRHRAVDNFSGEILSKVVRHSRNKSESFSASSTAVEEPINPASAVQKWISNILKPPSNPVISIPDPPPPSTPRKSRFHTDLPPSRLPIPPSDALLSPPKTLTDLPPRRTVSSPAFSLQTIRPKSNLNGFSRGDSGDLEFGLNGFLKEQRSKIQQISNGELDAEVKIILSGPSNSTSSMVAAICYAWLLENKMRQSSVETGRECLVVPVMNMQRGKMWNQRQVAWLFYHLGLDASSILFTDEVDLENLMIAGRTSILVVGQDVLKMSDGVGSQCTILTDNYCEDAYHLLQTPLLKNLLLAGILLDTKNLDASSQSSMTRDAEAVQLLSVGSGLTSKNGLYDQLMRVQKESAFLDALIQNYGKPPNDGSNNGVGRSERIKERNQASISPHGDAINQQKISNDFGTAKTGRVSPKSAKPNSLPFQTPTREASNPSRGKNKNFLAKWFGFGSK 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3535829 3540067 - CcPI632755_03g003170.1 Cco03g0317 173676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0317 583 MobiDBLite consensus disorder prediction 536 572 - -
Cco03g0317 583 MobiDBLite consensus disorder prediction 512 531 - -
Cco03g0317 583 MobiDBLite consensus disorder prediction 1 15 - -
Cco03g0317 583 MobiDBLite consensus disorder prediction 94 133 - -
Cco03g0317 583 Gene3D - 272 397 - -
Cco03g0317 583 Gene3D - 398 481 - -
Cco03g0317 583 MobiDBLite consensus disorder prediction 54 80 - -
Cco03g0317 583 PANTHER BNIP - RELATED 231 499 - GO:0004309(PANTHER)|GO:0005737(PANTHER)
Cco03g0317 583 MobiDBLite consensus disorder prediction 190 244 - -
Cco03g0317 583 MobiDBLite consensus disorder prediction 1 39 - -
Cco03g0317 583 MobiDBLite consensus disorder prediction 193 207 - -
Cco03g0317 583 MobiDBLite consensus disorder prediction 536 570 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0317 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1116 Cco-Chr2:16256386 Cco03g0317 Cco-Chr3:3535829 1.10E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g840 Blo04g00714 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0935 Cone16ag0068 . . Lsi02g00420 . Chy12g01234 Cme12g01657 . . . Bda14g00792 . Bpe15g00657 . . . . . . . . Car18g00189 Cpe09g00998 . Bhi08g01668 Tan05g1957 . Lac10g0498 . . . Cla03g00291 Cam03g0309 Cec03g0304 Cco03g0317 Clacu03g0310 Cmu03g0920 Cre03g0611 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004587 2 3 1 0 1 1 1 1 1 2 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 2 1 1 4 1 39