Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0337 ATGGCACCGCCTACAGTCCCCCTCTCTCTCCTCTCCCTCTTCCTCTTCTCCGTCTCTCTATCCGCCGCTCTCTCCGCTGCCCCTGCCGCCGTTCCCAACCCTGAACTCGTCGTACAAGAAGTACACAGAAGCATAATCAATGCGACGAAGAGGAGGAATTTAGGGTATCTCTCATGTGGGACTGGAAATCCAATCGACGATTGCTGGCGGTGCGATCCCAATTGGGAGAAAAATCGTCAGAGACTAGCCGACTGTGGGATTGGATTCGGCAAAAACGCCATTGGCGGTCGCGACGGCCAAATCTACGTCGTCACTGACTCCGGCGACGATGATCCAGTTAACCCTAAACCAGGAACTCTCCGTTACGCCGTAATCCAAGATGAACCCCTCTGGATCATCTTCGCTCGCGATATGGTGATTCGATTGAAAGAAGAACTGATTATGAATTCCTTCAAAACCATCGATGGCCGTGGCGCTAGCGTCCATATCGCCGGTGGGCCTTGCATTACCATTCAGTACGTGACAAACATTATAATCCATGGTCTCAACATTCACGACTGTAAGCCAGGGGGAAACACGGACGTGAGAGATTCCCCTCGACATTTCGGATTCAGAACCATATCGGACGGGGACGGCGTTTCGATCTTCGGCGGCAGCCATGTTTGGGTTGATCATTGCTCTTTATCAAACTGTAACGATGGATTAATCGACGCCATTCATGGGTCTACTGCAATTACGATTTCGAACAATTACATGACGCATCATGATAAAGTGATGTTGTTGGGGCACAGTGATTCGTACACTCAGGACAAGAATATGCAAGTCACCATTGCTTTCAACCATTTTGGTGAAGGTCTTGTTCAAAGAATGCCCAGATGCAGACATGGGTATTTTCATGTGGTGAACAACGACTATACGCATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCTCCAACTATCAACAGTCAAGGGAACAGATTTGTTGCACCGGATGACAGATTCAGCAAAGAGGTGACAAAATATGAGGATGCACCAGAGAGTGAGTGGAAGAATTGGCATTGGAGATCAGAAGGAGATCTGATGCTAAACGGAGCATTTTTCACTGCCTCCGGCGCCGGAGCGTCATCAAGTTACGCTAGAGCATCGAGTTTAGGGGCGAGACCGTCGTCGCTCGTCGGTACAATTACGACAAATGCGGGTGCACTGAACTGCAGAAAGGGCTCCCGCTGCTGA 1236 49.84 MAPPTVPLSLLSLFLFSVSLSAALSAAPAAVPNPELVVQEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCGIGFGKNAIGGRDGQIYVVTDSGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKPGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPDDRFSKEVTKYEDAPESEWKNWHWRSEGDLMLNGAFFTASGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3728773 3730798 - CcPI632755_03g003370.1 Cco03g0337 173696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0337 411 Gene3D - 62 404 IPR012334 -
Cco03g0337 411 Pfam Pectate lyase 147 328 IPR002022 -
Cco03g0337 411 PANTHER PECTATE LYASE 18-RELATED 21 408 IPR045032 GO:0030570(InterPro)
Cco03g0337 411 SUPERFAMILY Pectin lyase-like 38 406 IPR011050 -
Cco03g0337 411 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Cco03g0337 411 PRINTS Pollen allergen Amb family signature 382 405 IPR018082 -
Cco03g0337 411 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Cco03g0337 411 PRINTS Pollen allergen Amb family signature 353 377 IPR018082 -
Cco03g0337 411 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Cco03g0337 411 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Cco03g0337 411 PRINTS Pollen allergen Amb family signature 109 134 IPR018082 -
Cco03g0337 411 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Cco03g0337 411 SMART amb_all 137 334 IPR002022 -
Cco03g0337 411 FunFam Pectate lyase 62 404 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0337 Cco-Chr3:3728773 Cco08g1926 Cco-Chr8:30201351 1.00E-188 dispersed
Cco03g0337 Cco-Chr3:3728773 Cco05g0410 Cco-Chr5:3388023 4.00E-177 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0337 K01728 - csv:101209736 778.859