Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0338 ATGCCTTCAGCAAAGTTCAGACAAAGAACTTACGGTTCGCGCGAGTGCGAGCTTGAAGCATCCATGGAGGAAGTCGATGAGAAACAATGTATCAGAATTCTTCCTCACAAGCTCGTTCTCCAGAAAAAAGAGCCGGCTCTTCAATGGCTCATCGGATCGCCGTTTCTGTCGCCTTTGACTATCGTCTCCACTCTCAGATGCATCCATCATTCGTCTCCACCTGAATCTGTCTCGCCTGATTTCACCAAGGAAGCAGACGAGCTGCGGACGTTATTATTGAAGGGTTTTTGTATTATTGGAGCATTGGTTGTTGGGAACGTCGAAGAACATGCGAGTAAGGCAGTTGATGCGGCGCGGAGATTGAGGCAACTTCTATCTCACGGTGAAAAGACTGACAAGCAAATATTGATTGGAGCGGTTGCTGATATCAATTCTACAGATATTCACTTTTTTGTCTCCCAGTCTGAAAATGGCTCGAGCTTGGATTCTGTTTCTTCGGTTATGTACGAAAATAATGCCGAAAAATATATTTGGGAGAGAGGTTGTCTGATCCGGTGCGAACTACCGATTAGTGTACCGCTCTATATTCCTCTCAACAGTCCATCAGATGTTGAAAAGACGTACATACATGCCACAGAATCTGTTATTTCCAAGTTGAGAGACCCACAGGTGGTATATATAGTGGAACCAGTATGCAAAAACTCCACAGAAGATCCTTGTCCAGTCATTTTACGTGGTTCACAAATGGATTTCCAAATTAATCTCTCAAAGTTTAGGCAATTGAATGATGGCAGCCAAAATGCTGATGGAATGTCTTTGCCATGTGCAAACTTTTGTTTAAAAAGTAAAACTGATTCCTCAACGTTTTGTTCACAGAATGCAGATATAATCCAAGTGAGTGTTCTTCTAAATAGCTCGGCAAAGTCTCAAAAATCTAGTGCACCAGTTGTAGAGTACTTTCCAGCTGTGGACAAGACCAGGCTTTTGGTTGTCGACTTGAAGGCAGAAGTTCTCTGTTATGCTGCCAAGTTTCTTCCATTGACTTATGCTGTTTCAACCTTGATCATTCCGGGTTTAGTTGACCAGTTAAACTCGATGAAGAATGCAATATTACCCAACCTTGTAAACCAACTGCCTCATCTAGTGCCATATCATTTTTGCCCTCTTGGATTTTTGCATCCAATAACTGTTATCTATGAACTCACTTATGGGGAGACTGAAATGAAGCAAGTGGAACTAAGGAAAGCCCTACACTTAAGATTAGGGTTACCTTTTGATCGTCCTGTGCTAAGAATTGCTAGTGCATTGGATTTCTCTGGCAGGAAGGACAATTTGCCACGAAAGGGTTCCTTTTTGCTCAAAGATGTTCATATTGGAATTCCAAGCAGCGGTGTTTCAGGAGGCCAAATGTCTCTGGTTCAGGGGTCGTATGAGTACCATCATTATCTTCAAGAAGGTTTCAATGACTCGGGCTGGGGTTGTGCTTATCGGTCTTTGCAAACTATCATTTCATGGTTCAGACTCCAACATTATACATCCATAGATGTTCCTTCACATAGGGAAATACAAGAAGCACTAGTGAAGATTGGTGACAAGGATGATTCATTTATTGGGTCACGTGAATGGATTGGTGCCATCGAATTGAGCTTTGTTTTAGACAAATTGCTCGGTGTGAGTTGCAAAATCATAAATGTCAGATCTGGGGCTGAACTTCCGGAGAAATGTAGAGAATTGGCTGCACACTTCGAGAATCAAGGAACTCCTATAATGATTGGAGGTGGTGTTCTTGCATACACACTCTTGGGAGTTGATTACAATGAAGCAAGTGGAGATTGTGGGTTTTTAATATTGGATCCTCACTATACAGGAAGTGATGATGTCAAGAAAATTAAGCTCGTCTGCTGCTTATGTGCAGCATCCCCAAATCCCACCAGCCAGTCTCCATCTCCGATTTTCCTCCATTTTCTCGAAGAAGAAGAGGAGGAAGCAGAAGAAGTTAAGGAAAGTTATGGAGGAAACAAGACGGAAGAGGATTGGAACGACCCATTATTCAGATTTTTCAAATCCCGGACTTCAACAACGCAAGACCCACTACGGGAAAGCAAATTGTCCCTTCAGAAGAATCGCCGTTCGTCGTGGCATCTTGCCTTCGATGTTGAATTTTCCGATGAAGCTGAAACTGCACTCGTGGAAGACAAGGGAAAATTGGGTTCTGTGAGTCGGAATTCTAGGGTCTTGCCGGATGGTCTCGTCGGAGACATTGTGCGAATTGCGAGGAATTTGCCGCAGAATACGACTTTGGGGGAGACTTTGGGAGATTTTGAAGGAAGAATTAGTGAGAAAGAATGTCTGGAGGTGCTGCGCTTGTTGGGTGAGGAGAACCTTGTGGTATGTTGCTTGTACTTCTTTGAATGGATGGGTTTGCAGGAGACTTCGCTTGTTACACCTCGTGCTTATTCTCTTCTCTTTCCATTGTTGGGAAGAGCTGGAATGGGAGAAAAAATTATGGTGTTATTCAAGAACCTTCCACTCAAGAAGGAATTTCAGGATGTTCATGTATATAATTCTGCAATGTCTGGGCTTATGGTCTGCAAGAGGTACGATGATGCTTGCAAGGTGTACGAGGCCATGGAAACAAATAATGTCAATCCAGATCATGTGACATGTTCTATAATGATTACAATCATGAGAAAAATTGGCCGGAGTGCAAAGGATTCGTGGGACTACTTTGAGAAAATGAACAAAAAAGGAGTAAAATGGAGTCCAGAAGTTTTAGGTGCTCTGATTAAATCGTTTTGCGACGAGGGGCTGAAGAGTCAAGCACTTATCATCCAATTGGAAATGGAGAAGAAAGGGCTTGCTTTGAATGCGATCATGTATAATACAATCATGGATGCTTTTAGTAAATCGAATCAAATTGAGGAAGCTGAAGGTATCTTTGCTGAAATGAAATCTAAAGGAGTGAAACCAACGAGTGCAAGTTTTAACATCTTGATGGATGCATACAGTAGGAGGATGCAACCTGAGATTGTTGAGAAGCTTCTGGTTGAAATGAAGGACATGGGATTGGAGCCTAATGTGAAGTCATACACTTGCTTGATTAGTGCTTATGGGAGGCAGAAGAAAATGAGTGACATGGCTGCAGATGCATTTTTGAGAATGAAAAAGAACGGTATAAGGCCAACCTCTCATTCATATACAGCCCTGATTCACGCTTATTCGGTTAGCGGTTGGCACGAGAAAGCTTACTCGACATTCGAGAACATGCTGCAAGAAGGTTTAAAGCCATCCATTGAAACTTACACGACTCTTCTCGATGCATTTAGGCGTGCCGGTGATACTGTGGCGTTGATGAAAATATGGAAGTTAATGATTAGAGAAAAAATAGTAGGGACAAGAGTAACATTCAACATACTGCTAGATGGGTTTGCAAAACAGGGTCATTATGTTGAAGCTAGAGATGTGATCTCTGAGTTTGATAAGATTGGGTTACAACCAACTGTTATGACATACAACATGTTGATGAATGCATATGCTAGGGGAGGTCAACATTTAAAGATGCCACAGCTGCTGCAAGAGATGGCTGCTCGGGAACTAAAACCCGACTCCATTACTTATTCGACCATGATTTATGCCTTTGTACGTGTTCGCGATTTCAAAAGAGCTTTCTTTTATCACAAGAAGATGGTAAAAAATGGACAAGCGCCTGATGTGAAGTCATACCAGAAACTTAGATCAATCTTGGATGTAAAACTTGCTACAAAGAACAGGAAAGACAAGAGTGCCATTCTTGGTATAATAAACAGCAAAATGGGAATGGTGAAAGCTAAGAAGAAGGGCAAGAAAGATGAGAGGTCTGAACTCTTCTTTTTTCACGTTGTAAAGAGGGTTGGGGTTGTGCTTACCGCTCTTTGCAAACTATCATTTCATGGTGACTCCAACATAACATCCATAGATGTTACTTCACATAGGTTTAGCGGGTGGCACGAGAAAGCTAACTCGACATTTCAAGAACATGTTGCACGAAGGCTTAATGCCTTCCATTGA 4047 42.15 MPSAKFRQRTYGSRECELEASMEEVDEKQCIRILPHKLVLQKKEPALQWLIGSPFLSPLTIVSTLRCIHHSSPPESVSPDFTKEADELRTLLLKGFCIIGALVVGNVEEHASKAVDAARRLRQLLSHGEKTDKQILIGAVADINSTDIHFFVSQSENGSSLDSVSSVMYENNAEKYIWERGCLIRCELPISVPLYIPLNSPSDVEKTYIHATESVISKLRDPQVVYIVEPVCKNSTEDPCPVILRGSQMDFQINLSKFRQLNDGSQNADGMSLPCANFCLKSKTDSSTFCSQNADIIQVSVLLNSSAKSQKSSAPVVEYFPAVDKTRLLVVDLKAEVLCYAAKFLPLTYAVSTLIIPGLVDQLNSMKNAILPNLVNQLPHLVPYHFCPLGFLHPITVIYELTYGETEMKQVELRKALHLRLGLPFDRPVLRIASALDFSGRKDNLPRKGSFLLKDVHIGIPSSGVSGGQMSLVQGSYEYHHYLQEGFNDSGWGCAYRSLQTIISWFRLQHYTSIDVPSHREIQEALVKIGDKDDSFIGSREWIGAIELSFVLDKLLGVSCKIINVRSGAELPEKCRELAAHFENQGTPIMIGGGVLAYTLLGVDYNEASGDCGFLILDPHYTGSDDVKKIKLVCCLCAASPNPTSQSPSPIFLHFLEEEEEEAEEVKESYGGNKTEEDWNDPLFRFFKSRTSTTQDPLRESKLSLQKNRRSSWHLAFDVEFSDEAETALVEDKGKLGSVSRNSRVLPDGLVGDIVRIARNLPQNTTLGETLGDFEGRISEKECLEVLRLLGEENLVVCCLYFFEWMGLQETSLVTPRAYSLLFPLLGRAGMGEKIMVLFKNLPLKKEFQDVHVYNSAMSGLMVCKRYDDACKVYEAMETNNVNPDHVTCSIMITIMRKIGRSAKDSWDYFEKMNKKGVKWSPEVLGALIKSFCDEGLKSQALIIQLEMEKKGLALNAIMYNTIMDAFSKSNQIEEAEGIFAEMKSKGVKPTSASFNILMDAYSRRMQPEIVEKLLVEMKDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKNGIRPTSHSYTALIHAYSVSGWHEKAYSTFENMLQEGLKPSIETYTTLLDAFRRAGDTVALMKIWKLMIREKIVGTRVTFNILLDGFAKQGHYVEARDVISEFDKIGLQPTVMTYNMLMNAYARGGQHLKMPQLLQEMAARELKPDSITYSTMIYAFVRVRDFKRAFFYHKKMVKNGQAPDVKSYQKLRSILDVKLATKNRKDKSAILGIINSKMGMVKAKKKGKKDERSELFFFHVVKRVGVVLTALCKLSFHGDSNITSIDVTSHRFSGWHEKANSTFQEHVARRLNAFH 1348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3746931 3760733 + CcPI632755_03g003380.1 Cco03g0338 173697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0338 1348 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 850 884 IPR002885 -
Cco03g0338 1348 Gene3D Tetratricopeptide repeat domain 1043 1147 IPR011990 GO:0005515(InterPro)
Cco03g0338 1348 Gene3D Tetratricopeptide repeat domain 940 1042 IPR011990 GO:0005515(InterPro)
Cco03g0338 1348 Gene3D Tetratricopeptide repeat domain 1148 1261 IPR011990 GO:0005515(InterPro)
Cco03g0338 1348 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 956 990 IPR002885 -
Cco03g0338 1348 Gene3D Tetratricopeptide repeat domain 750 906 IPR011990 GO:0005515(InterPro)
Cco03g0338 1348 Pfam Ubiquitin-fold modifier 1 specific protease 2, N-terminal 292 439 IPR049387 -
Cco03g0338 1348 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1167 1201 IPR002885 -
Cco03g0338 1348 Coils Coil 653 676 - -
Cco03g0338 1348 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 991 1025 IPR002885 -
Cco03g0338 1348 SUPERFAMILY Cysteine proteinases 487 626 IPR038765 -
Cco03g0338 1348 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1132 1166 IPR002885 -
Cco03g0338 1348 Pfam PPR repeat family 850 894 IPR002885 -
Cco03g0338 1348 Pfam PPR repeat family 1166 1214 IPR002885 -
Cco03g0338 1348 Pfam PPR repeat family 956 1003 IPR002885 -
Cco03g0338 1348 NCBIfam pentatricopeptide repeat 1100 1130 IPR002885 -
Cco03g0338 1348 NCBIfam pentatricopeptide repeat 994 1027 IPR002885 -
Cco03g0338 1348 NCBIfam pentatricopeptide repeat 1170 1203 IPR002885 -
Cco03g0338 1348 NCBIfam pentatricopeptide repeat 1064 1097 IPR002885 -
Cco03g0338 1348 NCBIfam pentatricopeptide repeat 958 991 IPR002885 -
Cco03g0338 1348 NCBIfam pentatricopeptide repeat 1134 1161 IPR002885 -
Cco03g0338 1348 NCBIfam pentatricopeptide repeat 853 885 IPR002885 -
Cco03g0338 1348 NCBIfam pentatricopeptide repeat 1204 1238 IPR002885 -
Cco03g0338 1348 NCBIfam pentatricopeptide repeat 1029 1062 IPR002885 -
Cco03g0338 1348 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1062 1096 IPR002885 -
Cco03g0338 1348 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1026 1061 IPR002885 -
Cco03g0338 1348 Pfam Pentatricopeptide repeat domain 1086 1143 IPR002885 -
Cco03g0338 1348 Pfam Pentatricopeptide repeat domain 1013 1073 IPR002885 -
Cco03g0338 1348 Gene3D - 451 640 - -
Cco03g0338 1348 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1202 1236 IPR002885 -
Cco03g0338 1348 PANTHER UFM1-SPECIFIC PROTEASE 2 159 631 IPR051250 -
Cco03g0338 1348 Pfam Peptidase family C78 469 629 IPR012462 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0338 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g882 . Blo16g00245 . . . . Bma06g00240 . Cmo13g00801 Cmo18g00086 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00459 Csa01g00915 Chy12g01209 Cme12g01631 . . Bda11g01628 . . . . . . . . Cma13g00772 Cma18g00109 Car13g00619 . . . . . . . . . . Cla03g00315 Cam03g0334 Cec03g0325 Cco03g0338 Clacu03g0335 Cmu03g0941 Cre03g0635 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003460 2 1 2 2 1 1 2 1 1 1 1 1 2 2 2 2 1 2 1 1 2 2 2 2 2 1 2 2 2 2 48