Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0342 ATGCCTCTCAAGACCGAACATGGAGCATCCGACAGCTCCCTCGATGAGCACTCCAAGACGGTCCTTTCTTCTAAAGTCGTCGTTCTTGCTGACCTCAACGTTGATCCTCCAGAAATGGATGACGACAGTTCCGTTCACGTTTCAGCTTCGACTATCTCCAGGTTATCTATGGATGAGAGCAATCAAGACAAAACTGTGGCAATTTGCAAGGATACTAATTCAATGGAAGTTGAAGGTAGACGTTTAAGCAAAATTGGAAAGTGCCGTTCAAGAAATAATAAGGTAGAGTACTCTCTTGATTCTGCAGCTGATGTAGATGGTGATCAACCTGGTCCAGGTGTTTCAACTTCACGTGAAGAAAAAGTCAGCAGCCTCAAAACTGGTTTAGTTCATGTAGCAAGAAAGATGCCAAAAAATGCTCACGCTCATTTCATTCTTGGCCTCATGTACCAGAGGTTGGGCCAGCCACAAAAGGCAGTTTTAGCATATGAGAAGGCAGAGGAGATCCTACTCCAAAGTGATGTTGAGATTCAGAGACCAGAGTTGCTCTCATTGGTCCAAATTCATCATGCACAGTGTCTCCTCCTAGAAAGTGCAGGGGATAATAGTTCAAACAAAGAACTTGAACAGGAGGAGCTTGATGAGATTTTTTCTAAACTTGAGCATTCAATGCAATCTGATGTTAGACAGGCAGCTGTGTGGAATACCCTAGGCTTGTTACTTCTTACAACTGGTCGAGTGAAGAGTGCTATTTCAGTGTTGTCATCCCTGTTGGCCATTGTTCCTAACAACTATGATTGCCTTGGAAACCTTGGAATTGCTTATCTTCAAAGTGGAAATATGGAACTATCAGAAAAATGTTTTCAAGAATTGATCCTGACGGATCAAAATCATCCTGCTGCCCTCATCAACTATGCTGCTTTTCTCTTGTGCAAGTATGGTTCTACTGTTGTAGGTGCTGGAGCAAATGCCGGTGAAGGTGGTGTTGATGAGAAGGTTGTAGGCATGAATGTTGCAAAGGAATGTTTGCTAGCGACCCTAAAGGTAGATCCAAAAGCAGCACATGCGTGGGCAAATCTTGCTAATGCGTATTTTGTGACTGGGGACCACAGAAGTTCTGCCAAGTGCTTGGAGAAGGGAGCAAAACTGGAGCCAAATTGCATGTCTATGAGATATGCCGTTGCTATGCACCGACTTAAGGATGCAGAAAGGTCTCAAGATCGTAGTGAGCAACTCTCCTGGGCTGGAAATGAAATGGCCTCAATTATTAGAGATGGAGATGGCTCGACAATCGATCATTCTATAGCATGGGCTGGGCTTTCCATGGTTCACAAGACTCAACATGAAATTGCTGCAGGATTTCGTACAGATCAGAGTGATCTGAGAGAAAAGGAAGAACACGCTGTCTACAGTTTAAATCAGGCAATAGCTGAGAACCCAGATGATGCTGTTCAGTGGCATCAATTCGGCCTCCATAGCCTCTGTACGCGAGAATTTAAAACATCACAAAGATACCTCAAAGCTGCAATTGCCCGCGTCAAGAACTGTAGTTTTGCATGGTCAAACCTAGGTATCTCGTTGCAACTCTCAGACAACCCGACACAGGCTGAAGAAGTATACAAGAAAGCTTTGTCATTGGTGGCCACAGAACAAGCACATACTGTATTTTGTAACCTCGGAAATCTATATCGACAACAAAAGCAGTACGAACGTGCCAAAGCTATGTTCTCAAAGTCTCTGGAACTGCAACCCGGTTATGCACCTGCCTTTAACAATCTAGGATTAGTGTTTATTGCAGAGGGTCAATGGGAGGAGGCTAAGTATTGTTTTGAGAAAGCTCTCGAGGCGGATCCGTTACTCGATTCAGCTAAGTCGAACTTGATTAAAACAGTAGGCATATCTCGACTATTGAAAAGCTTCGGCAAGACCAGAAGCTCCGGCGAAGTATATACGGCCATTGGAGGTCGGCGAAGGATGAAACGCTTCTTTAAACCTATAGAAAAGGAAGGGTCTTCGAAGAAAGCGGCTCTCTCACCTTCGCTGAAAGATGATGATGATTCGGAAGCATCAGCGCCGGACAAGAAAGAGCCTCGTAAATTTGTAACTTGGAATGCAAATAGTTTACTTCTCCGAGTTAAAAACGACTGGCCGGAGTTCACCAAGTTTGTCACCAACCTTGATCCGGATGTTATTGCCATACAAGAAGTAAGAATTCCTGCAGCAGGTTCAAAAGGTGCACCTAAAAACCAAGGAGAGTTGAAAGATGACACAAGCACATCACGGGAAGAGAAGCAGATGTTGATGCGTGCTCTTTCCAGTCCACCCTTTGCAAATTATCGTGTTTGGTGGTCTCTTTCAGATTCCAAGTATGCTGGAACTGCATTGTTTATAAAAAAGTGTTCTGCACCAAAAAATGTTTTCTTCAACCTAGACAGAATAGCTTCAAAGCATGAAGTGGACGGTCGTGTAATTTTAGCTGAATTCGAGACATTTCGTTTATTGAACACATATTCACCAAATAATGGATGGAAGGAAGAGGAGAACTCTTTTAAAAGGAGAAGGAAATGGGATAAGAGAATGTTGGAGTTTGTTATCGAATCTTCTGATAAGCCTCTTATATGGTGTGGTGACCTGAATGTTAGTCATGAAGAGATTGATGTGAGCCATCCAGATTTTTTCAGCGCAGCAAAACTTAATGGGTACATACCCCCAAATAAAGAGGATTGTGGGCAGCCTGGATTTACCTTGGCTGAAAGGAAGCGCTTCAATTCTATATTGAAGGAGGGAAAGCTGATAGATGCATATAGATTCCTTCACGAGGAGAAAGACATGGAGCGTGGCTTTTCTTGGTCTGGGCACCCCATTGGAAAGTATCGAGGCAAAAGGATGAGAATTGACTATTTCTTAGTTTCCGAGAGTCTCGTAGGTAGGATTATTTCATGTGAGATGCATGGGCAAGGGATTGAATTACAAGGTTTCTACGGAAGCGATCATTGCCCCGTTTCTCTTGAGCTGTCAGAAGCCAGTTCTTGCCCTGAGTCTCAAAAAAACTGA 3054 43.55 MPLKTEHGASDSSLDEHSKTVLSSKVVVLADLNVDPPEMDDDSSVHVSASTISRLSMDESNQDKTVAICKDTNSMEVEGRRLSKIGKCRSRNNKVEYSLDSAADVDGDQPGPGVSTSREEKVSSLKTGLVHVARKMPKNAHAHFILGLMYQRLGQPQKAVLAYEKAEEILLQSDVEIQRPELLSLVQIHHAQCLLLESAGDNSSNKELEQEELDEIFSKLEHSMQSDVRQAAVWNTLGLLLLTTGRVKSAISVLSSLLAIVPNNYDCLGNLGIAYLQSGNMELSEKCFQELILTDQNHPAALINYAAFLLCKYGSTVVGAGANAGEGGVDEKVVGMNVAKECLLATLKVDPKAAHAWANLANAYFVTGDHRSSAKCLEKGAKLEPNCMSMRYAVAMHRLKDAERSQDRSEQLSWAGNEMASIIRDGDGSTIDHSIAWAGLSMVHKTQHEIAAGFRTDQSDLREKEEHAVYSLNQAIAENPDDAVQWHQFGLHSLCTREFKTSQRYLKAAIARVKNCSFAWSNLGISLQLSDNPTQAEEVYKKALSLVATEQAHTVFCNLGNLYRQQKQYERAKAMFSKSLELQPGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSAKSNLIKTVGISRLLKSFGKTRSSGEVYTAIGGRRRMKRFFKPIEKEGSSKKAALSPSLKDDDDSEASAPDKKEPRKFVTWNANSLLLRVKNDWPEFTKFVTNLDPDVIAIQEVRIPAAGSKGAPKNQGELKDDTSTSREEKQMLMRALSSPPFANYRVWWSLSDSKYAGTALFIKKCSAPKNVFFNLDRIASKHEVDGRVILAEFETFRLLNTYSPNNGWKEEENSFKRRRKWDKRMLEFVIESSDKPLIWCGDLNVSHEEIDVSHPDFFSAAKLNGYIPPNKEDCGQPGFTLAERKRFNSILKEGKLIDAYRFLHEEKDMERGFSWSGHPIGKYRGKRMRIDYFLVSESLVGRIISCEMHGQGIELQGFYGSDHCPVSLELSEASSCPESQKN 1017
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3769635 3786136 + CcPI632755_03g003420.1 Cco03g0342 173701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0342 1017 ProSiteProfiles TPR repeat profile. 587 620 IPR019734 GO:0005515(InterPro)
Cco03g0342 1017 Pfam Endonuclease/Exonuclease/phosphatase family 701 998 IPR005135 GO:0003824(InterPro)
Cco03g0342 1017 SUPERFAMILY DNase I-like 699 1005 IPR036691 -
Cco03g0342 1017 ProSiteProfiles TPR repeat profile. 354 387 IPR019734 GO:0005515(InterPro)
Cco03g0342 1017 ProSiteProfiles TPR repeat region circular profile. 553 584 - -
Cco03g0342 1017 FunFam DNA-(apurinic or apyrimidinic site) lyase 670 1007 - -
Cco03g0342 1017 SMART tpr_5 587 620 IPR019734 GO:0005515(InterPro)
Cco03g0342 1017 SMART tpr_5 517 550 IPR019734 GO:0005515(InterPro)
Cco03g0342 1017 SMART tpr_5 553 586 IPR019734 GO:0005515(InterPro)
Cco03g0342 1017 SMART tpr_5 140 173 IPR019734 GO:0005515(InterPro)
Cco03g0342 1017 SMART tpr_5 354 387 IPR019734 GO:0005515(InterPro)
Cco03g0342 1017 SMART tpr_5 231 264 IPR019734 GO:0005515(InterPro)
Cco03g0342 1017 SMART tpr_5 265 298 IPR019734 GO:0005515(InterPro)
Cco03g0342 1017 MobiDBLite consensus disorder prediction 101 122 - -
Cco03g0342 1017 MobiDBLite consensus disorder prediction 1 20 - -
Cco03g0342 1017 MobiDBLite consensus disorder prediction 749 763 - -
Cco03g0342 1017 CDD Ape1-like_AP-endo 699 1005 - -
Cco03g0342 1017 ProSiteProfiles AP endonucleases family 1 profile. 698 1007 IPR004808 GO:0004518(InterPro)|GO:0006281(InterPro)
Cco03g0342 1017 Gene3D Endonuclease/exonuclease/phosphatase 663 1007 IPR036691 -
Cco03g0342 1017 Pfam Tetratricopeptide repeat 554 616 - -
Cco03g0342 1017 ProSiteProfiles TPR repeat profile. 231 264 IPR019734 GO:0005515(InterPro)
Cco03g0342 1017 ProSiteProfiles TPR repeat profile. 553 586 IPR019734 GO:0005515(InterPro)
Cco03g0342 1017 MobiDBLite consensus disorder prediction 678 696 - -
Cco03g0342 1017 Pfam Tetratricopeptide repeat 354 387 IPR019734 GO:0005515(InterPro)
Cco03g0342 1017 Pfam Tetratricopeptide repeat 140 169 IPR019734 GO:0005515(InterPro)
Cco03g0342 1017 MobiDBLite consensus disorder prediction 742 765 - -
Cco03g0342 1017 Gene3D Tetratricopeptide repeat domain 438 653 IPR011990 GO:0005515(InterPro)
Cco03g0342 1017 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 27 630 - -
Cco03g0342 1017 Gene3D Tetratricopeptide repeat domain 335 424 IPR011990 GO:0005515(InterPro)
Cco03g0342 1017 ProSiteProfiles TPR repeat profile. 140 173 IPR019734 GO:0005515(InterPro)
Cco03g0342 1017 MobiDBLite consensus disorder prediction 668 696 - -
Cco03g0342 1017 SUPERFAMILY TPR-like 137 390 IPR011990 GO:0005515(InterPro)
Cco03g0342 1017 ProSiteProfiles TPR repeat region circular profile. 587 618 - -
Cco03g0342 1017 Gene3D Tetratricopeptide repeat domain 201 313 IPR011990 GO:0005515(InterPro)
Cco03g0342 1017 Gene3D Tetratricopeptide repeat domain 127 184 IPR011990 GO:0005515(InterPro)
Cco03g0342 1017 SUPERFAMILY TPR-like 464 618 IPR011990 GO:0005515(InterPro)
Cco03g0342 1017 Pfam Tetratricopeptide repeat 242 301 - -
Cco03g0342 1017 NCBIfam exodeoxyribonuclease III 699 1005 IPR004808 GO:0004518(InterPro)|GO:0006281(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0342 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g891 Blo04g00709 . . . . . . . Cmo13g00807 . . . . . . Cpe20g00195 . . . . . . . . . . . . . . . Cone2ag0948 . . . Lsi02g00463 . Chy12g01207 Cme12g01628 . . . . . Bpe15g00664 Bma03g00757 . . . . Cma13g00776 . Car13g00622 . . . Bhi08g01692 Tan05g2896 . Lac10g0535 . . . Cla03g00320 Cam03g0336 Cec03g0328 Cco03g0342 Clacu03g0338 Cmu03g0944 Cre03g0637 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009614 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32