Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0343 ATGGCAGCAACAGCCATGGCTGCGGAGCCGACGCAAGAGGTACTTTCTTGGCTCAAAACCCTACCGTTGGCTCCTGAATATCATCCGACTTTGGCAGAGTTTCAAGATCCAATTTCATACATTTTCAAGATCGAAAAAGAGGCTTCCAAGTTTGGAATCTGCAAAATTGTGCCCCCTGTACCTCCTTCACCGAAGAAAACTGTAATTGTCAATTTTAATAAGTCGCTTGCAGCTCGTGCCCCCTGTTCTGGCTCGACTAATTCCAAGTCTCCGCCTACATTCACAACTCGACAACAGCAGATCGGGTTTTGCCCGCGGAAAACACGACCTGTTCAGAAATCAGTGTGGCAGAGCGGTGAGTACTATACATTTCAGCAATTTGAGGCTAAGGCGAAGAACTTTGAGAAAAGCTATTTGAAGAAATGTGCCAAGAAAGGAGGGCTTTCGTCTTTGGAAATCGAGACGCTCTATTGGAGGGCCACTTTGGACAAGCCCTTTTCGGTGGAATATGCAAACGATATGCCTGGTTCAGCTTTTGTGCCGGTAAGTGCAAAAACTTTTAGGGAGGCAGGGGAAGGAACAACGCTTGGGGAAACGGCGTGGAACATGAGGGGTGTGTCTAGGGCGAAAGGGTCTCTGTTGAGGTTTATGAAGGAAGAGATTCCAGGAGTTACTTCGCCAATGGTGTATGTTGCTATGATGTTCAGTTGGTTTGCTTGGCATGTAGAAGACCATGACTTGCATAGTTTGAATTATCTGCATATGGGGGCGGGAAAGACTTGGTATGGTGTACCTAGAGATGCTGCTGTGGCGTTTGAGGAGGTTGTAAGGGTTCAGGGATACGGAGGAGAAATTAATCCCCTTGTAACTTTTGCTGTTCTTGGTGAGAAGACCACTGTGATGTCACCTGAAGTTCTAGTTAGCGCTGGAGTTCCATGTTGCAGGTTAGTGCAAAATGCAGGTGAATTTGTTGTCACTTTTCCTCGAGCTTATCATACAGGTTTCAGCCATGGATTTAACTGTGGGGAGGCAGCCAATATTGCAACTCCAGAATGGTTAAGGGTTGCTAAAGATGCTGCAATTCGTAGAGCTTCCATCAATTATCCTCCAATGGTCTCTCATTATCAGTTGCTATATGATCTTGCTTTAAGTTCCAGAGCACCTATGTGCGCTGGTGCTGAACCAAGAAGTTCACGACTGAAAGATAAAAGGAGGAGTGAAGGGGAAACGGTTATAAAAGAGTTATTTGTACAGAATATTGTAGAGAATAACACCCTGCTGGACATTCTTGGAAGAGGAGCTTCAGTTGTACTTCTTCCCCCAGGTTCTTTAGAATCGATTTATTCCAGACTGCGTGTTGGATCCCACTTGAGAGCAAAATCTAGATTTCCTGCTGGTGTTTGCAGTTCTAAGGAAGAAACCAAATCTCCTCAAAGTTTTGATTATGATAATCTCGCACTAGAAAATAGTCCGGGAATTAATCGAGTGAAAGGTTTCTATTCAGCTAACGGGCTATATTCTACTCTATCTGAAAGTAGCACGGACAATTTATGTGCTTCAAGTTCAAGGTCTTTGAATGCCAACCATGAACGGGGTGGTAATGTTCAAAGCGATGGATTATCAGATCAAAGACTCTTTTCTTGTGTCACATGTGGTATTTTAAGCTTTGCCTGTGTAGCCATCATCCAACCCAGAGAACAAGCTGCTAGGTACCTTATGTCAGCTGACTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGGATAGCCAGTGAAGGGATTGCTACTAGAGATGGGCATGCAGTTAGCTCTTGGCAGAATAGTAACAGGGGAAAAAGAGATAAATGTGTCTCTGATGGTTTGTACGACGTCCCAGTCCAGGCTGTCAATCGCCAGCTTACAGTAGCAGATGAAAGTTACGAAGCTAATTTGAATACTGAAAAACGGAATGAGACTTCTGCCCTTGGAATGCTTGCATTGACTTATGGACATTCTTCTGATTCTGAGGAGGACCATGCTGAAGCAGATGCTGCTTTAAATGCAGATGATGATGCTAAACTAATGATTTGTTCTTCAGAAGACCAATATCAGTTTGAGAATTCTGGCCTTTCTTCTGGTGAATATTGCAAGAATACTGCAATTTCGAATAACGATCCCTCGTCTTATGGTGTTAACGCTGCAGATCAAATGCAATTTCAAGTCAATGACTATGAAGAATTTGGGCGAGCTAGATCTGATTCCAAAGATTCATTCAATTGTTCTTCTGAGTCTGAAATGGATGGCATAGGTTCAACAAAGAAAAATGGCTTGTCAACTAGATATCAAGATTCACATGTGAATGTTAGATCTTCCTTGGATGCTGATACTGATAAACCAGTGTTTGACAAGTCCACTGAACCAGTGGAGATTGAGAATATGCCATTTGCTCCAGATATCGATGAAGACTCCTCGAGATTGCATGTATTTTGTCTAGAGCATGCAAAAGAAGTGGAACAACAACTTCGACCAATTGGAGGAGTGAACATTCTTTTACTTTGTCATCCAGACTATCCGAAGATGGAGGCAGAAGCAAAACTGCTGGCACAAGAATTGAATATGAACCATCTGTGGACTGATACAATGTTCAGAGGTGCCACCCAAGATGAAGAAAAGAGGATTCAGTTAGCTTTAGATAGCGAGGAAGCAACTCCGGGTAATGGAGATTGGGCTGTAAAGTTGGGAATAAACCTATTTTATAGTGCCAACCTTAGTCACTCTCCTCTTTATAGTAAGCAGATGCCATACAACACTGTTATTTATAATGCATTTGGCCGTAGTACTTCTGCTAACTCTTCTGGTAAGCCGAAAGTCTATCAAAGGAGGACTGGCAAGCTGAAAAGAGTAGTTGCAGGGAAATGGTGCGGGAAAGTCTGGATGTCAAATCAAGTTCATCCTTTGCTAGCAAAGAGAGATCCTCAAGAAGAAGATGTAGACATCTTCCCTCCTTGGACAATGTCAGATGAGAAGATTGATAGGAAACCAGAAAATATCCAGAAAAACGAGACTGTTATGGTAAATAGAAAGTCTGCTGGCAAGAGAAAAATGACTTATGGGAGCGGAACAACTAAGAAAGCCAAACCTATAGAGTCAGAGGACATGGTTTCAGATGCTTCGGTTGAAGATTGTATCCATCAGCATCATAGTATTCTACGAAACAAGCGATCCAAATTTGTTGAGAGCAATGATGCTATATCAGATGATTCTGTGGAGGATGATTCTTGTAGAAAACATGGAGTTCCCATCAGCAAGGGAGTGACATATTGTGGGATAGATGATACCGGTTCAGATGATTCTCTTGGAGATTGTCATAATCTGCGCAGAAGGTTCTCTGGATTCAAGCTGCCTAAGTGGGGTGAGATAGAACCTGCACTTTCTGATGATTCCTTAGAGCACTATTCTTCTCAGCATCGTGGGAAAAATATTAAAAGCAAGACAGAAGAATACATTGAGAGACAAGATGCACTTTCAGATGAGTGTCTGGAGAGTGGTTCTCTTAAGCAATATAGAAGGATTCCGAGAAGCAAGCAAACCAAAGTTCTTAAAAAGAATGCCATTTCACATGATATACGGGACGATAGTTTTCTTTGGCATCATCGAAGGCCTTCCAGAAGCAAGAAGGCCAAATCTATCGAGAGTGAAGATGCAGCTTCAGAGGACTCCCAAGAAAATAATTCTCATCAGCATAGAAGTATGCCTCAAAGAAAACCAGTCAAACGCACTGCAAGGGAAGATGCATTTTCAGATGGTCCAGATGAAGATGATAATTCTCTTCTGCAGCATCGGAATATTAGAAGAAATGTGCAATTCAAATACAGTGAGAGAGAAATTACATCAGATGACCAGCTTGATGATAGTGCTAATCAAAGCAGGAGGAGGGTACTCCGAAGTAAGCCAGTCAAGACAGAGACAATTTCACAAATGAAACAAGAGATCCTGCGACCTGCAAGGCGGGGAGCCTCTCAGACTTTGAAAGAAGAATTTGCTCAATCTTTAAAACGTGGAGGCCGCCATACGTTAAAATTAGAGACCCCTCAGCCAAAAATACAGCCTGCCACAAATAGACGAGATAAGCAAACTAAGAGGAATAGTAAATCGACTGATTTAGAGTCAGAGGAAGAGCAACCAGGTGGACCTAGCACACGTCTTAGAAAAAGAACCCCAAAGCCTACAAAACTTTCAGAAGTGAAGCCGAAAGATAAAAAACCAATTGGCAAGAAAAAGGTGAAGAATGGTTCATCCTTGAAGACTCCAGCAGGCCATAGAGATTCAAAAGCAAGGGACGAGGAATCAGAGTATCTTTGTGACATCGAGGGTTGCAATATGAGTTTTGGTTCAAAACAAGAACTTGCCATGCACAAACGAAATATTTGTCCTGTCAAGGGGTGTGGGAAGAAGTTTTTCTCACATAAGTACCTTGTGCAGCATCGTCGAGTCCACATGGACGACCGTCCCCTCAAATGTCCATGGAAGGGCTGCAAGATGACTTTCAAATGGGCATGGGCACGAACAGAACATATTCGCGTTCATACAGGTGCCCGACCTTATGTTTGTGCTGAACCAGGATGTGGTCAGACATTCAGATTTGTTTCGGATTTTAGTCGTCACAAGCGGAAGACTGGACATTCGACAAAGAAAGATGCTAATCCTGATCTTGGTTGGGGGTTGGACCTTTACCCCTTCTGGGAACTTTGTGCAGTTTTCTTTTCCTTCCATTGA 4755 42.88 MAATAMAAEPTQEVLSWLKTLPLAPEYHPTLAEFQDPISYIFKIEKEASKFGICKIVPPVPPSPKKTVIVNFNKSLAARAPCSGSTNSKSPPTFTTRQQQIGFCPRKTRPVQKSVWQSGEYYTFQQFEAKAKNFEKSYLKKCAKKGGLSSLEIETLYWRATLDKPFSVEYANDMPGSAFVPVSAKTFREAGEGTTLGETAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVQGYGGEINPLVTFAVLGEKTTVMSPEVLVSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHYQLLYDLALSSRAPMCAGAEPRSSRLKDKRRSEGETVIKELFVQNIVENNTLLDILGRGASVVLLPPGSLESIYSRLRVGSHLRAKSRFPAGVCSSKEETKSPQSFDYDNLALENSPGINRVKGFYSANGLYSTLSESSTDNLCASSSRSLNANHERGGNVQSDGLSDQRLFSCVTCGILSFACVAIIQPREQAARYLMSADCSFFNDWVVGSGIASEGIATRDGHAVSSWQNSNRGKRDKCVSDGLYDVPVQAVNRQLTVADESYEANLNTEKRNETSALGMLALTYGHSSDSEEDHAEADAALNADDDAKLMICSSEDQYQFENSGLSSGEYCKNTAISNNDPSSYGVNAADQMQFQVNDYEEFGRARSDSKDSFNCSSESEMDGIGSTKKNGLSTRYQDSHVNVRSSLDADTDKPVFDKSTEPVEIENMPFAPDIDEDSSRLHVFCLEHAKEVEQQLRPIGGVNILLLCHPDYPKMEAEAKLLAQELNMNHLWTDTMFRGATQDEEKRIQLALDSEEATPGNGDWAVKLGINLFYSANLSHSPLYSKQMPYNTVIYNAFGRSTSANSSGKPKVYQRRTGKLKRVVAGKWCGKVWMSNQVHPLLAKRDPQEEDVDIFPPWTMSDEKIDRKPENIQKNETVMVNRKSAGKRKMTYGSGTTKKAKPIESEDMVSDASVEDCIHQHHSILRNKRSKFVESNDAISDDSVEDDSCRKHGVPISKGVTYCGIDDTGSDDSLGDCHNLRRRFSGFKLPKWGEIEPALSDDSLEHYSSQHRGKNIKSKTEEYIERQDALSDECLESGSLKQYRRIPRSKQTKVLKKNAISHDIRDDSFLWHHRRPSRSKKAKSIESEDAASEDSQENNSHQHRSMPQRKPVKRTAREDAFSDGPDEDDNSLLQHRNIRRNVQFKYSEREITSDDQLDDSANQSRRRVLRSKPVKTETISQMKQEILRPARRGASQTLKEEFAQSLKRGGRHTLKLETPQPKIQPATNRRDKQTKRNSKSTDLESEEEQPGGPSTRLRKRTPKPTKLSEVKPKDKKPIGKKKVKNGSSLKTPAGHRDSKARDEESEYLCDIEGCNMSFGSKQELAMHKRNICPVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKDANPDLGWGLDLYPFWELCAVFFSFH 1584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3790006 3797995 + CcPI632755_03g003430.1 Cco03g0343 173702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0343 1584 SMART cupin_9 195 364 IPR003347 -
Cco03g0343 1584 FunFam Probable lysine-specific demethylase ELF6 1525 1554 - -
Cco03g0343 1584 ProSiteProfiles JmjC domain profile. 198 364 IPR003347 -
Cco03g0343 1584 ProSitePatterns Zinc finger C2H2 type domain signature. 1500 1522 IPR013087 -
Cco03g0343 1584 SUPERFAMILY beta-beta-alpha zinc fingers 1516 1550 IPR036236 -
Cco03g0343 1584 SUPERFAMILY Clavaminate synthase-like 209 375 - -
Cco03g0343 1584 MobiDBLite consensus disorder prediction 1266 1311 - -
Cco03g0343 1584 MobiDBLite consensus disorder prediction 754 773 - -
Cco03g0343 1584 FunFam Probable lysine-specific demethylase ELF6 17 368 - -
Cco03g0343 1584 MobiDBLite consensus disorder prediction 1209 1440 - -
Cco03g0343 1584 ProSiteProfiles JmjN domain profile. 24 65 IPR003349 -
Cco03g0343 1584 SMART c2h2final6 1498 1522 IPR013087 -
Cco03g0343 1584 SMART c2h2final6 1528 1554 IPR013087 -
Cco03g0343 1584 SMART c2h2final6 1468 1492 IPR013087 -
Cco03g0343 1584 SMART c2h2final6 1445 1467 IPR013087 -
Cco03g0343 1584 ProSiteProfiles Zinc finger C2H2 type domain profile. 1528 1559 IPR013087 -
Cco03g0343 1584 ProSitePatterns Zinc finger C2H2 type domain signature. 1470 1492 IPR013087 -
Cco03g0343 1584 Gene3D Cupin 17 368 - -
Cco03g0343 1584 MobiDBLite consensus disorder prediction 1022 1044 - -
Cco03g0343 1584 ProSiteProfiles Zinc finger C2H2 type domain profile. 1468 1497 IPR013087 -
Cco03g0343 1584 MobiDBLite consensus disorder prediction 1366 1392 - -
Cco03g0343 1584 Gene3D Classic Zinc Finger 1466 1552 - -
Cco03g0343 1584 ProSitePatterns Zinc finger C2H2 type domain signature. 1530 1554 IPR013087 -
Cco03g0343 1584 Pfam jmjN domain 25 58 IPR003349 -
Cco03g0343 1584 FunFam Probable lysine-specific demethylase ELF6 1495 1524 - -
Cco03g0343 1584 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1334 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cco03g0343 1584 MobiDBLite consensus disorder prediction 745 773 - -
Cco03g0343 1584 SUPERFAMILY beta-beta-alpha zinc fingers 1484 1526 IPR036236 -
Cco03g0343 1584 ProSiteProfiles Zinc finger C2H2 type domain profile. 1498 1527 IPR013087 -
Cco03g0343 1584 SMART JmjN_1 23 64 IPR003349 -
Cco03g0343 1584 MobiDBLite consensus disorder prediction 1219 1242 - -
Cco03g0343 1584 Pfam JmjC domain, hydroxylase 229 346 IPR003347 -
Cco03g0343 1584 MobiDBLite consensus disorder prediction 1400 1414 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0343 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0343 Cco-Chr3:3790006 Cco08g0903 Cco-Chr8:20923726 8.90E-07 dispersed
Cco03g0343 Cco-Chr3:3790006 Cco10g0140 Cco-Chr10:1345370 1.10E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g892 . . . . . . . . . Cmo18g00183 . . . . . Cpe20g00334 . . . . . . . . . . . . . . . Cone2ag0949 Cone16ag0052 . . Lsi02g00464 Csa01g00920 Chy12g01206 Cme12g01627 . . . . Bpe07g00876 . . . Sed08g2466 . . . Cma18g00207 Car13g00624 Car18g00201 Cpe09g00989 . Bhi08g01693 Tan05g2897 Cmetu10g1062 Lac10g0536 Hepe07g2164 . . Cla03g00321 Cam03g0337 Cec03g0329 Cco03g0343 Clacu03g0339 Cmu03g0945 Cre03g0638 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008005 0 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58902 PF02373 JmjC 1.20E-36 CL0029 Cco TF