Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0344 ATGGAACCTTCTGAAGCTGTTTCGGTCCCTAATCACTGTGAAGCACCGGCTTCTGGGTTTCAATCTTCACAGTTTCATAGTTCTGTTCTTGATCCTGCTCCATTTGATGCGCAGCATGTAGCCACAGATGATCGCATCCATGCAGAACTTCAGAAATTGGATTTGAAGGATGAGAAAGAGGAAACCGTGAAAGATTTTGATGAAGGTGGAGAATGGGAAGTTGCGAAGAATCCCTGTGAAGATGAAGGAAATGATACGAAGAAGATCGATGAAAGTGATCGAGATAGAAGCGTTAGGAATGAGGATGATGATGATGATGTCGATGAGGAGGTTGATGCAGGCGACGGCGACGGCGGTGAAGTGGAAAGGAAAGGGGATTGGAGAGCCAGAAGCAACCAATACCCAGTACGGCCTGAGGCTGAGGATTGTGCGTTTTACCTTAAAACAGGGACTTGCAAGTTCGGATCATTTTGCAAATTCAATCACCCTGTGCGAAAGAAAAACCAGGTTGTTTCTGAGAAATTGAAATACGAGGACGATTCAGCTGGGATAGCAAGCAAGACAGAATGCAAGTTTTACTTGAGGACTGGGGGTTGTAAATATGGAAACGCCTGTAGATATAACCACACGAGACCAAGAACGGTAACAAGCCCAATTCTAGAACTGAACTTCCTTGGTCTGCCAATCCGACCAGATGAAAAAGAATGTCCCTATTACATGCGCACAGGGTCCTGCAAATATGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACAACTGTTGCTGTATCTGAACCTCTTTCAGGATATAACAATGGAGTGCCCCTACAAGGTGCATCACAATCACAGATCACATCCTGGACTTCACCAAGAGTACTTAACGAAGCCACAACATTTGTACCTGCTATGATTTCACCATCTCAAGATTCAGAATGGAATGGGTACCAGGCTCCCATTTATCCATCAGAAATCAGCGTGCTTCCACCTCCAACATACGTCGTGAACAATATAGCATCGGAGACGGATCTCTATTCTTCTCATCAGCAGGTGGACGAATATCCAGAACGACCTGGTCAACCCGAATGCAGTTACTTTCTAAAGACAGGAGATTGTAAATTTAAATCTCTTTGCAAATATCACCATCCGAAGAATCGGAACCCTAAGTTACCGACTTGCACTCTCAATGACAAAGGCCTGCCTTTGAGACCTGATCAGAACGTATGTACGTATTATAGTCGCTATGGCATCTGCAAGTTCGGGCCATCGTGCAAGTTTGACCACCCTATTCTTCCAGCTTCTTCAACTGTGGGCGAGCTTGAACAGCAACCTCACTACGGCAACTTTAGCACTGCAGAAGGGGCTGAAATGGCCGGAGGAGGGAGCGGAAACAGTGCCACAGTTGAGCAGTCTGCATAA 1416 45.62 MEPSEAVSVPNHCEAPASGFQSSQFHSSVLDPAPFDAQHVATDDRIHAELQKLDLKDEKEETVKDFDEGGEWEVAKNPCEDEGNDTKKIDESDRDRSVRNEDDDDDVDEEVDAGDGDGGEVERKGDWRARSNQYPVRPEAEDCAFYLKTGTCKFGSFCKFNHPVRKKNQVVSEKLKYEDDSAGIASKTECKFYLRTGGCKYGNACRYNHTRPRTVTSPILELNFLGLPIRPDEKECPYYMRTGSCKYGANCKFNHPDPTTVAVSEPLSGYNNGVPLQGASQSQITSWTSPRVLNEATTFVPAMISPSQDSEWNGYQAPIYPSEISVLPPPTYVVNNIASETDLYSSHQQVDEYPERPGQPECSYFLKTGDCKFKSLCKYHHPKNRNPKLPTCTLNDKGLPLRPDQNVCTYYSRYGICKFGPSCKFDHPILPASSTVGELEQQPHYGNFSTAEGAEMAGGGSGNSATVEQSA 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3799382 3803612 + CcPI632755_03g003440.1 Cco03g0344 173703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0344 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 357 383 IPR000571 GO:0046872(InterPro)
Cco03g0344 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 232 256 IPR000571 GO:0046872(InterPro)
Cco03g0344 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 404 428 IPR000571 GO:0046872(InterPro)
Cco03g0344 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 188 210 IPR000571 GO:0046872(InterPro)
Cco03g0344 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 163 IPR000571 GO:0046872(InterPro)
Cco03g0344 471 MobiDBLite consensus disorder prediction 1 31 - -
Cco03g0344 471 SUPERFAMILY CCCH zinc finger 231 258 IPR036855 GO:0046872(InterPro)
Cco03g0344 471 ProSiteProfiles Zinc finger C3H1-type profile. 402 430 IPR000571 GO:0046872(InterPro)
Cco03g0344 471 SUPERFAMILY CCCH zinc finger 137 166 IPR036855 GO:0046872(InterPro)
Cco03g0344 471 ProSiteProfiles Zinc finger C3H1-type profile. 184 212 IPR000571 GO:0046872(InterPro)
Cco03g0344 471 MobiDBLite consensus disorder prediction 15 29 - -
Cco03g0344 471 ProSiteProfiles Zinc finger C3H1-type profile. 356 384 IPR000571 GO:0046872(InterPro)
Cco03g0344 471 ProSiteProfiles Zinc finger C3H1-type profile. 230 258 IPR000571 GO:0046872(InterPro)
Cco03g0344 471 MobiDBLite consensus disorder prediction 52 101 - -
Cco03g0344 471 SMART c3hfinal6 137 164 IPR000571 GO:0046872(InterPro)
Cco03g0344 471 SMART c3hfinal6 185 211 IPR000571 GO:0046872(InterPro)
Cco03g0344 471 SMART c3hfinal6 402 429 IPR000571 GO:0046872(InterPro)
Cco03g0344 471 SMART c3hfinal6 356 383 IPR000571 GO:0046872(InterPro)
Cco03g0344 471 SMART c3hfinal6 232 257 IPR000571 GO:0046872(InterPro)
Cco03g0344 471 SUPERFAMILY CCCH zinc finger 400 428 IPR036855 GO:0046872(InterPro)
Cco03g0344 471 Gene3D - 118 179 - -
Cco03g0344 471 Gene3D - 319 389 - -
Cco03g0344 471 Gene3D - 401 454 - -
Cco03g0344 471 Gene3D - 182 268 - -
Cco03g0344 471 MobiDBLite consensus disorder prediction 449 471 - -
Cco03g0344 471 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872(InterPro)
Cco03g0344 471 MobiDBLite consensus disorder prediction 102 116 - -
Cco03g0344 471 MobiDBLite consensus disorder prediction 52 129 - -
Cco03g0344 471 PANTHER PROTEIN PHOSPHATASE RELATED 73 430 IPR050974 GO:0003729(PANTHER)
Cco03g0344 471 SUPERFAMILY CCCH zinc finger 188 212 IPR036855 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0344 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1938 Cco-Chr2:32303082 Cco03g0344 Cco-Chr3:3799382 8.70E-21 dispersed
Cco03g0344 Cco-Chr3:3799382 Cco03g1076 Cco-Chr3:18987124 9.10E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g893 Blo04g00708 Blo16g00248 . . . Bpe13g00218 Bma06g00242 . Cmo13g00808 Cmo18g00184 . . . . . Cpe20g00333 . . . . . . . . . . . . . . . Cone2ag0950 Cone16ag0051 . . Lsi02g00466 Csa01g00921 Chy12g01205 Cme12g01626 . . Bda11g01626 Bda14g00777 . Bpe15g00167 Bma03g00756 . Sed08g2465 . . Cma13g00777 Cma18g00208 Car13g00625 Car18g00202 Cpe09g00988 . Bhi08g01694 Tan05g2898 Cmetu12g0034 Lac10g0537 Hepe07g2163 . . Cla03g00322 Cam03g0338 Cec03g0330 Cco03g0344 Clacu03g0340 Cmu03g0946 Cre03g0639 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004285 3 1 3 2 2 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 1 1 1 2 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58903 PF00642 zf-CCCH 5.60E-09 CL0537 Cco TF