Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0348 ATGTTGTTATGCATTGAAGGATCTCTCAAAAGGCTGTTCGAGGTTTCACATGAAAGCTGTAGGAAGCTTTCTGTCTCCTGGGCATCTGAATTGTCTTTTCCATCTTTGCATTTCAGTAGAAGGCAGCAAAAGATGAGCAGCAAGGTAGAAGCCTGTTCAGAATGCACCCGAAGATGCTTACATCTTCATAGAAAGACAGGGAATCTATCATCTGTTACGTCATTCTTCAAAGTGATGTTTGGAGATCACTTTTCTGAAGTTTTGTACTTCCCACCTATGTTTGCTGCTACAGTGTCGAGGTTGGTTAATGAAAAGGTTGTTCTTGAGGATTCTCTTGGACAACAATGGAAGGTAACAGTTTCTAATTGTGAAGGATCTCTTGCCTTTCAAGAAGGATGGAATGCTTTTTCATCAGAGCATAGCCTTGAAATTGGAGACTTTTTGATTTTCAATCGTGTTATGGACTTGCATTTCGATGTTAGTATCTACACGAAAACTGGTTGTGAAAAAGTAGAGTTTGCTAAAAAAAGAAATATGAGGAAAAGAACTAGAAGTTCTGGTCCTGTACTTGAGACAACTAATGAAGGTTTGACAAATCCGCAAGCTTCATACCCCTCTGTGGGTTCTGAATCCAATGTGGCATTATCTCAAGATAAATGTCAAATGGCTGGTTCTCGAAACATGAATGTAAACTGGGACAAAAGGCTGAAGTGCTGGAGGAATGATGCCCCTCTCTGTAAAATAGACGTTGTTGATGATCCATATTGTTTCATCAACCAAAACAAGGATGTGGGACTGGAGGAAAACAGAAGCCCCTTACTTGACTTGTTTTCCATGGAAATGCAGATAGTCAGTCCCTCGATTCCCTCCATCAATGAGAATACCACAAATAATGTTGCTGAGGATGAGTTAAATCCCTCAATTCCTTCCACATCACTGAATGCTGCAATCATTGTGAGCCCAGTTAACAATGCTCCAGTAGATATAAGAGGAGACATGGAAGCATTGCCTTTGAATATATCTGCTAACGAGTTAATTGATAAAAGTCAGTGTTTTGAGAAGGCTGAGATAAAGACGAGTGTCTCTGACAACGATCCTTGCCACGACAAGACTATTGAGGTTCCTTTTATTTCATCTGCAAAAAATTCTGATAGAGATGTTGAGAACTTTTGTGACACGCCATTAAAAATGGTAAAAGACTCCCAGAATGTACCGGCAATATGCAACACACCATCAACAATTACAAGACATGATCAGGGGTCTAACGAGAAACGTACTTCTTCCATCGAACATTGCCGTAGTGTGAAACAGGAGGACTCTTCAAATTCCTTGGAGGTTAAAAAATGGGACGGGACGAAGATCATTAAGAAGGAACCATTGGAAATTAAAACAGAAGTGAACAACTTTGGAGACTGCATTAAGCAAATATTGGAACCAAAAGTCGTTAAAGAGGAGATCTTTGAGACGTCTAACCAAAGTGGCAGAGATAATAATGATGACACCAATAATGAAGATCCGATTGGAACTCCAGCCCATATCTCCTGTATTATAGCTAAAGATACTCTATCTTTTCTGGAGCTGCCAACGAGTTTGCACCTATCATGTTCAAGAGGCCGAAGAAATCCAGAGAAGAAGAAGGTAGTGTTTCTTAGGGATCCTAGGAAGAGATTATGGCCAATTCTTTACCACGAGATGCCTAATGTTAAAGTTCTAACAAGTGGGTGGGAAGCTTTTTGCTCTGCAAATAAAATCCAATCTGGGGACGAGTGTTTGTTCCATGTCGAGGATGAGTTCGAGCGCATATATGAACTAAAAATCAAGATTCCGGAAATGGCGGCGTTGGCGGCAGCGAACTCAGGGTGCGGCAGTGGCAACGTCTGGAGGTCGCACGATGGTAGTGAGAGGAAAAAAGTAACACCCCAAAAGAAAACCTCTCACCGGCGGTCTGTGGCGGTAGACTGCGGCACCACTAGAGTGGAGGCGAAGGTCGTAGGGAGGCAGCAGGGATGGCAATCAGGCATTTGA 2025 41.98 MLLCIEGSLKRLFEVSHESCRKLSVSWASELSFPSLHFSRRQQKMSSKVEACSECTRRCLHLHRKTGNLSSVTSFFKVMFGDHFSEVLYFPPMFAATVSRLVNEKVVLEDSLGQQWKVTVSNCEGSLAFQEGWNAFSSEHSLEIGDFLIFNRVMDLHFDVSIYTKTGCEKVEFAKKRNMRKRTRSSGPVLETTNEGLTNPQASYPSVGSESNVALSQDKCQMAGSRNMNVNWDKRLKCWRNDAPLCKIDVVDDPYCFINQNKDVGLEENRSPLLDLFSMEMQIVSPSIPSINENTTNNVAEDELNPSIPSTSLNAAIIVSPVNNAPVDIRGDMEALPLNISANELIDKSQCFEKAEIKTSVSDNDPCHDKTIEVPFISSAKNSDRDVENFCDTPLKMVKDSQNVPAICNTPSTITRHDQGSNEKRTSSIEHCRSVKQEDSSNSLEVKKWDGTKIIKKEPLEIKTEVNNFGDCIKQILEPKVVKEEIFETSNQSGRDNNDDTNNEDPIGTPAHISCIIAKDTLSFLELPTSLHLSCSRGRRNPEKKKVVFLRDPRKRLWPILYHEMPNVKVLTSGWEAFCSANKIQSGDECLFHVEDEFERIYELKIKIPEMAALAAANSGCGSGNVWRSHDGSERKKVTPQKKTSHRRSVAVDCGTTRVEAKVVGRQQGWQSGI 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3819169 3825181 + CcPI632755_03g003480.1 Cco03g0348 173707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0348 674 MobiDBLite consensus disorder prediction 185 209 - -
Cco03g0348 674 ProSiteProfiles B3 DNA-binding domain profile. 548 612 IPR003340 GO:0003677(InterPro)
Cco03g0348 674 PANTHER B3 DOMAIN-CONTAINING 73 594 IPR050655 -
Cco03g0348 674 SUPERFAMILY DNA-binding pseudobarrel domain 71 168 IPR015300 -
Cco03g0348 674 CDD B3_DNA 74 163 IPR003340 GO:0003677(InterPro)
Cco03g0348 674 MobiDBLite consensus disorder prediction 182 209 - -
Cco03g0348 674 MobiDBLite consensus disorder prediction 418 436 - -
Cco03g0348 674 CDD B3_DNA 521 593 IPR003340 GO:0003677(InterPro)
Cco03g0348 674 MobiDBLite consensus disorder prediction 626 651 - -
Cco03g0348 674 Gene3D - 69 168 IPR015300 -
Cco03g0348 674 Gene3D - 508 610 IPR015300 -
Cco03g0348 674 ProSiteProfiles B3 DNA-binding domain profile. 73 166 IPR003340 GO:0003677(InterPro)
Cco03g0348 674 MobiDBLite consensus disorder prediction 410 436 - -
Cco03g0348 674 Pfam B3 DNA binding domain 539 597 IPR003340 GO:0003677(InterPro)
Cco03g0348 674 Pfam B3 DNA binding domain 75 163 IPR003340 GO:0003677(InterPro)
Cco03g0348 674 SUPERFAMILY DNA-binding pseudobarrel domain 524 598 IPR015300 -
Cco03g0348 674 SMART B3_2 524 610 IPR003340 GO:0003677(InterPro)
Cco03g0348 674 SMART B3_2 75 166 IPR003340 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0348 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g901 . . . . . . . . Cmo13g00811 Cmo18g00189 . . . . . Cpe20g00331 . . . . . . . . . . . . . . . . Cone16ag0046 . . Lsi02g00470 Csa01g00928 Chy12g01199 Cme12g01623 . . . . . . . . . . . Cma13g00779 . Car13g00627 Car18g00205 Cpe09g00985 . Bhi08g01703 Tan05g2910 . . . . . Cla03g00327 Cam03g0344 Cec03g0335 Cco03g0348 Clacu03g0345 Cmu03g0951 Cre03g0643 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005615 0 3 0 1 0 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 6 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58904 PF02362 B3 1.30E-09 CL0405 Cco TF