Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0362 ATGGCTGCCCATTCCGTTGATTCCCGGAGCGGTTTCTGTCCTCAAACCAAGATTTACAAGAGCCTCCGACCACCCTTCTCGCTTCCGCCGTTATCTCAGCCACTCACCGTTGCCGGACATGCTCTTTCTGTTCTCCGATCATCTCTTCCTCTGCCGAACACTGCTGCTCTCGTCGACTCCGACTCCGGCGTCACTGTCTCTTACGCCCTTTTCCTCCGTCAAATCCGAAACCTCACCTCTAACCTTAGAGCTCTTTACTCCTTCTCCAATGGTCAAGTGGCTTTTATTCTTTCACCGACTTCTCTGCAAATTCCTGTGTTGTATTTCGCTCTCTTATCTCTCGGCGTTATTGTCTCTCCCGCTAATCCAATCAGTTCCGAATCGGAGATTGCTCACCAGGTTAGTCTCTGTAAACCGGTCATTGCCTTCGCTACTTCCTCAACGGCGTCCAAGCTCCCGAGGCTTCCACTTGGTACTGTACTGATAGATTCGCCGGAGTTTCTATCTATGATGACTGAAATTAGTCGATTGGAAGGAGTAAACGATGGCATTGTGGACGGAGAAATCAATCAAAACGCCTCCGCGGCGATTCTTTACTCTTCAGGGACTACCGGACGAGTGAAAGGCGTCTTACTCTCTCACCGGAACCTCATATCGGCGATCTCTGGGGTTCAAGTATTGGAGAAAACGCCCGTCGAAGGAGAGATTGAGCCACATCCCGTTGCTCTGTGTCTATTACCTCTGTTCCATGTTTTCGGGTTCTTTATGTTGTTTCGATCGATTTCAGAGGGCAATACATTGGTTCTGATGCGTAAATTCGATTTCCAGAGGATGTTAGGAGCAGTGGAGAAGTATAGGGTTACATACATTCCGGTTTCTCCGCCGCTGGTGGTGGCGATGGCCAAATCGGAGTTGGTGGCTAAGTATGATCTCAGCTGTCTTCAAATTTTGGGATGCGGCGGCGCTCCTCTTGGTAAAGAAGTCATTGATAAATTCCATCTCAGGTTTCCCAACGTAGAAATTATACAGGGATATGGCTTGACAGAGAGTTCAGGAGCGGCATCAAGAACTGTGGGGCCTGAAGAATGCAGTAATGCAGGTTCAGTAGGTCGCCTATCTGAAAATATGGAAGCCAAAATAGTTGATCCTTCGTCTGGAGAAGCCTTACCTCCTGGTCACAAAGGAGAACTTTGGCTGCGAGGTCCAGGAATCATGAAAGGTTATGTTGGAGATGAAAGGGCAACCACTGAAACCTTGCATCCTGAGGGATGGCTAAAGACTGGTGACCTTTGTTACTTTGATTCTGATGGATTTCTCTACATCGTTGATCGATTAAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCTGCTGAATTGGAGCATTTGCTTCAATCCCATCCCGAGATCCTTGACGCTGCTGTGATACCCTATCCTGATGAAGAAGCCGGAGAGATTCCTTTAGCTTATGTGGTTAGAAAGCCTGAAAGTAATATCAGTGCGACTCAAGTCATGGATTTCATTGCAAAACAGGTTGCGCCGTACAAGAAAATTCGACGAGTTTCTTTTATTGACGCAATCCCGAAATCGCCTGCAGGGAAGATTCTAAGGAGGGAGCTTGCGAAACATGCTCTCTCACATGGTTCTAATAAGTTGTAA 1662 47.47 MAAHSVDSRSGFCPQTKIYKSLRPPFSLPPLSQPLTVAGHALSVLRSSLPLPNTAALVDSDSGVTVSYALFLRQIRNLTSNLRALYSFSNGQVAFILSPTSLQIPVLYFALLSLGVIVSPANPISSESEIAHQVSLCKPVIAFATSSTASKLPRLPLGTVLIDSPEFLSMMTEISRLEGVNDGIVDGEINQNASAAILYSSGTTGRVKGVLLSHRNLISAISGVQVLEKTPVEGEIEPHPVALCLLPLFHVFGFFMLFRSISEGNTLVLMRKFDFQRMLGAVEKYRVTYIPVSPPLVVAMAKSELVAKYDLSCLQILGCGGAPLGKEVIDKFHLRFPNVEIIQGYGLTESSGAASRTVGPEECSNAGSVGRLSENMEAKIVDPSSGEALPPGHKGELWLRGPGIMKGYVGDERATTETLHPEGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHLLQSHPEILDAAVIPYPDEEAGEIPLAYVVRKPESNISATQVMDFIAKQVAPYKKIRRVSFIDAIPKSPAGKILRRELAKHALSHGSNKL 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3930565 3943588 - CcPI632755_03g003620.1 Cco03g0362 173721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0362 553 FunFam 4-coumarate--CoA ligase 2 447 548 - -
Cco03g0362 553 CDD 4CL 29 541 - -
Cco03g0362 553 Pfam AMP-binding enzyme 52 408 IPR000873 -
Cco03g0362 553 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 12 541 - GO:0016405(PANTHER)
Cco03g0362 553 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
Cco03g0362 553 Pfam AMP-binding enzyme C-terminal domain 460 535 IPR025110 -
Cco03g0362 553 Gene3D - 33 446 IPR042099 -
Cco03g0362 553 Gene3D - 447 547 IPR045851 -
Cco03g0362 553 SUPERFAMILY Acetyl-CoA synthetase-like 51 547 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0362 Cco-Chr3:3930565 Cco05g2400 Cco-Chr5:32479547 3.00E-111 dispersed
Cco03g0362 Cco-Chr3:3930565 Cco05g1735 Cco-Chr5:25701367 6.70E-135 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0362 K01904 - csv:101211791 968.378