Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0369 ATGAAATCTCCACCGTTGATTGTCGAGGACCTCCATAAACGGTTCATGTGTGGTGCAGCAGATCAAGCCCAACCTCGTTGCTGCCGGCGAAGGAAATCACATCAGTTCGCAATGGCGGTCTCATTGAGCGATGTCAAGTCGGCAGCCGGTCTAAAAAAGCTCGACGAGTACCTGCTCAGTCGTAGTTACATTTCTGGGTATCAAGCTTCAAAAGATGATATCGCTGTTTACGAAGCTATCTCCAAACCCGTTTCCAGCGAATATGTCAACGTATCTAGGTGGTTCAATCACATCGAAGCACTCTTGAGAGCCTCTGCTGGTTTTGGAGAGGGTTCTGGCGTTAAGTTCGATGCAGAAGCAATCGCAACCCCACCAGCTGCCGATGCTAAGGCTAGCGCTGATGACGACGATGACGACGATATGGATCTGTTTGGTGAAGAGACTGAAGAGGAAAAGAAGGCTGCCGAAGAGCGCGCAGCTGCCATCAAGGCTTCTGCAAAGAAGAAAGAGAGTGGAAAATCATCAGTTTTGATGGATATCAAGCCTTGGGATGATGAAACTGACATGAAGAAACTTGAAGAGGCCGTAAGAGGTGTTCAGATGGAAGGATTGCTTTGGGGAGCATCCAAACTCGTCCCTGTTGGATATGGTATTAAGAAACTGCAGATAATGCTCACAATTGTTGACGACCTTGTAGTTGTGATATCGTTGCCTTCAACAAAATCTAAGATTGAGCTTTTTGCCAAGTCCAAGAGCTGA 759 47.17 MKSPPLIVEDLHKRFMCGAADQAQPRCCRRRKSHQFAMAVSLSDVKSAAGLKKLDEYLLSRSYISGYQASKDDIAVYEAISKPVSSEYVNVSRWFNHIEALLRASAGFGEGSGVKFDAEAIATPPAADAKASADDDDDDDMDLFGEETEEEKKAAEERAAAIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRGVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVVVISLPSTKSKIELFAKSKS 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4018589 4020703 - CcPI632755_03g003690.1 Cco03g0369 173728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0369 252 MobiDBLite consensus disorder prediction 132 146 - -
Cco03g0369 252 SUPERFAMILY eEF-1beta-like 170 239 IPR036219 -
Cco03g0369 252 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 137 145 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Cco03g0369 252 Gene3D - 166 250 IPR014717 -
Cco03g0369 252 FunFam Elongation factor 1-beta 1 like 167 251 - -
Cco03g0369 252 MobiDBLite consensus disorder prediction 125 156 - -
Cco03g0369 252 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 38 234 IPR049720 GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER)
Cco03g0369 252 Coils Coil 145 165 - -
Cco03g0369 252 Gene3D - 33 107 - -
Cco03g0369 252 Pfam EF-1 guanine nucleotide exchange domain 175 243 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Cco03g0369 252 SMART EF1_GNE_2 173 250 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Cco03g0369 252 FunFam Elongation factor 1-delta 1 40 115 - -
Cco03g0369 252 SUPERFAMILY GST C-terminal domain-like 45 103 IPR036282 -
Cco03g0369 252 CDD EF1B 171 234 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0369 Cco-Chr3:4018589 Cco11g0573 Cco-Chr11:6138301 2.20E-72 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0369 K03232 - csv:101215489 279.256