Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0369 | ATGAAATCTCCACCGTTGATTGTCGAGGACCTCCATAAACGGTTCATGTGTGGTGCAGCAGATCAAGCCCAACCTCGTTGCTGCCGGCGAAGGAAATCACATCAGTTCGCAATGGCGGTCTCATTGAGCGATGTCAAGTCGGCAGCCGGTCTAAAAAAGCTCGACGAGTACCTGCTCAGTCGTAGTTACATTTCTGGGTATCAAGCTTCAAAAGATGATATCGCTGTTTACGAAGCTATCTCCAAACCCGTTTCCAGCGAATATGTCAACGTATCTAGGTGGTTCAATCACATCGAAGCACTCTTGAGAGCCTCTGCTGGTTTTGGAGAGGGTTCTGGCGTTAAGTTCGATGCAGAAGCAATCGCAACCCCACCAGCTGCCGATGCTAAGGCTAGCGCTGATGACGACGATGACGACGATATGGATCTGTTTGGTGAAGAGACTGAAGAGGAAAAGAAGGCTGCCGAAGAGCGCGCAGCTGCCATCAAGGCTTCTGCAAAGAAGAAAGAGAGTGGAAAATCATCAGTTTTGATGGATATCAAGCCTTGGGATGATGAAACTGACATGAAGAAACTTGAAGAGGCCGTAAGAGGTGTTCAGATGGAAGGATTGCTTTGGGGAGCATCCAAACTCGTCCCTGTTGGATATGGTATTAAGAAACTGCAGATAATGCTCACAATTGTTGACGACCTTGTAGTTGTGATATCGTTGCCTTCAACAAAATCTAAGATTGAGCTTTTTGCCAAGTCCAAGAGCTGA | 759 | 47.17 | MKSPPLIVEDLHKRFMCGAADQAQPRCCRRRKSHQFAMAVSLSDVKSAAGLKKLDEYLLSRSYISGYQASKDDIAVYEAISKPVSSEYVNVSRWFNHIEALLRASAGFGEGSGVKFDAEAIATPPAADAKASADDDDDDDMDLFGEETEEEKKAAEERAAAIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRGVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVVVISLPSTKSKIELFAKSKS | 252 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4018589 | 4020703 | - | CcPI632755_03g003690.1 | Cco03g0369 | 173728 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0369 | 252 | MobiDBLite | consensus disorder prediction | 132 | 146 | - | - | |
Cco03g0369 | 252 | SUPERFAMILY | eEF-1beta-like | 170 | 239 | IPR036219 | - | |
Cco03g0369 | 252 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 1. | 137 | 145 | IPR001326 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Cco03g0369 | 252 | Gene3D | - | 166 | 250 | IPR014717 | - | |
Cco03g0369 | 252 | FunFam | Elongation factor 1-beta 1 like | 167 | 251 | - | - | |
Cco03g0369 | 252 | MobiDBLite | consensus disorder prediction | 125 | 156 | - | - | |
Cco03g0369 | 252 | PANTHER | EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER | 38 | 234 | IPR049720 | GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER) | |
Cco03g0369 | 252 | Coils | Coil | 145 | 165 | - | - | |
Cco03g0369 | 252 | Gene3D | - | 33 | 107 | - | - | |
Cco03g0369 | 252 | Pfam | EF-1 guanine nucleotide exchange domain | 175 | 243 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Cco03g0369 | 252 | SMART | EF1_GNE_2 | 173 | 250 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Cco03g0369 | 252 | FunFam | Elongation factor 1-delta 1 | 40 | 115 | - | - | |
Cco03g0369 | 252 | SUPERFAMILY | GST C-terminal domain-like | 45 | 103 | IPR036282 | - | |
Cco03g0369 | 252 | CDD | EF1B | 171 | 234 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0369 | Cco-Chr3:4018589 | Cco11g0573 | Cco-Chr11:6138301 | 2.20E-72 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0369 | K03232 | - | csv:101215489 | 279.256 |