Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0370 ATGGTTTCAACGAGAAGAAGTGGATCTCTCTCTGGTAGCAATAGCAAAAGATCTTCGTCCTCGGAGGATAAGCCATCGTCACCGAAGCGTCAAAAGGTGGAAAATGGGTGTGGCTCAGAGAAATCGATGCCGGCGGCGGAGAATTCTAAGGAATTATTCACCGCGCCGACTGTGGATCCCGGAGAGCATGGACCTGGTGGTGGTCCGATCGCTGGAGTTGACGTGGGAGAAGGTGTGAGCTCTTTGAAGGAGGATGCTGCACCAGCGGCCGTCGCTCTTACCACTCCTATCGCCGAGGGAACTTCGCTGGTAGGGGATAAGCCTAGGAGTTCATTTTCATCATGGAGTCACTATGCTGCGAAGCAGAATCCAAATTTTGAAACGACAACTCCTTGGTGTAGGCTTCTCTCACAGTTTGGTCAGAACTCCAATGTTGATATTTTCTCGTCAAATTTTACCATTGGTTCTAGTAGAGGTTGCAACTTTCCCTTGAAGGATCACACAATTAGTGGGACACTTTGCAAGATCAAGCACACTCAGCGTGACGGTAGTGCTGTGGCTGTGCTTGAAAGTACGGGAGGCAAGGGATCGGTGATGGTTAATGGGTTGACTGTCAAGAAGAGCACCAACTGTGTGCTAAATTCGGGTGACGAGGTGGTCTTTGGTGCTTTGGGGAATCATGCTTATATATTTCAGCAACTTATGAATGAGGTTTCAGTTAAAGGTCTAGATGTTCAGAGTGGTGTTGGAAAATTCTTGCAGCTCGGAAAGAGGACTGGCGATCCGTCTGCTGTGGCCGGGGCATCGATCTTGGCATCTCTTTCAAGTCTCAGGCAGGATATTTCACGTTGGAAGCCTCCTTCTCAGACCAGCAGTAAAACACACCAAGGTGCTGAACTTCCTTCTAAATCTGTTGTTCATGATGCAATGGAACTTGAAATTGATGCTGTTGAAGGCAACTCAAATCCAGAAGTACGAAATGATAAAGCTGTAGACTCAAGCACAACTAACAGGAATCTTCATCCCGGCTCCAATCCAGATGCTGTCATAGAGGCAGGCAATGTAATGGAAGAAAGAAACCAGTGGATTGGAGAGTTGCAGCCAGCATCAACTTCGGGAATGTCTTTGCGGTGTGCAGCCTTTAAAGAAGATGTTCTTGCAGGGATTGTTGATGGAAGGGACTTAGAAGTTTCATTTGACAACTTTCCATACTATTTGAGTGAGAATACGAAGAATGTGCTTATTGCTGCTTCTTTCATACACTTGAAGCATAAAGAACATTCAAAGTATACCTCAGAATTAAATACGGTGAATCCACGAATTCTACTTTCTGGTCCCGCTGGTTCAGAGATATATCAAGAGATGCTAGCAAAGGCACTTGCCAACTACTATGGTGCTAAGCTACTCATATTTGATAGCCATTCATTTTTGGGCGGTTTATCATCAAAGGAAGCAGAGCTGTTGAAGGATGGGATAAATGCAGCAAAGTCTTGTAGCTGTTCTAAACAGAGTATGACATCTACTGAGACCACTAAGAACACAGATCAAGTGACTGGTGAAGAAGATACTCCAAGCTCTTCAAATGCTACTTTATTCACCCCTGATTCCCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTGGGACAGCAAAGAATAACTTTTTAAAAATTGGTGATAGAGTAAGATTTATAGGTTCAGCTTCTGGGGGGATATATCCTACAACATCTCCCTCAAGGGGCCCACCCAATGGAACTCGTGGAAAGGTTGTATTAACTTTTGACAACAACTCTTCGTCAAAAATTGGTGTTAAGTTTGATAAACTTATACCTGATGGAGTTGATCTTGGGGGATATTGTGAAGGAGGCTATGGATATTTCTGTAATGCAACCGATCTTCGTTTGGAGAACTCTGGCGTGGAAGAATTGGATAAGATACTTATTGATATTTTATTTGAGGCGGTATTTAGTGAAAGCAGAAATTCTCCTTTCATTTTGTTCATGAAAGATGCTGAGAAGTCTCTTGTCGGAAATTTAGACTCCTATTCTACTTTTAAAATTAGACTGGAAAAGCTTCCTGACAATGTTATAGTAATTGGCTCTCATACTCATACTGACAACCGCAAAGAGAAGTCGCATCCTGGTGGCCTGCTTTTCACGAAATTTGGCAGCAATCAAACTGCTCTTCTTGACTTGGCATTTCCGGATAGTTTTGGAAGACTACATGACAGAGGAAAGGAAGTTCCAAAAGCAACAAAACTTCTTACTAAACTATTTCCCAATAAAGTTACAATCCATATGCCGCAGGATGAGGGCCTTCTTGTGTCATGGAAACACCAGTTAGAACGAGATGCTGAAACTCTCAAAATGAAGGGAAATCTGAATCAATTGCGCGTTGTTTTGAGTAGGAGTGGGATGGATTGTGAAGGTTTAGAGACATTATGCATCAAGGATCAAACACTTACGAATGAGAGTGCGGAGAAGGTAGTTGGATGGGCCTTAAGCCATCATTTAATGCAGAATCTAGAAGCCGATCCTGATTCTAGAGTTCTTTTGTCTAGTGAGAGCATTCAATACGGGATCAGCATCTTACAGGCTATCCAGAATGAATCTAAGTGCTTGAAGAAGTCACTTAAGGATGTTGTCACGGAGAATGAATTTGAGAAAAGGCTTTTAGCTGACGTTATCCCACCCAGTGATATAGGAGTCACATTTGATGATATTGGAGCTCTTGAAAATGTGAAGGATACTCTAAAGGAGTTGGTGATGCTTCCTTTACAAAGGCCCGAACTTTTCTGCAAGGGGCAATTGACCAAGCCATGCAAAGGTATTCTGTTATTTGGCCCACCTGGAACAGGTAAGACGATGCTTGCAAAAGCTGTTGCTACTGAAGCTGGTGCAAATTTTATCAACATTTCCATGTCAAGCATTACGTCAAAGTGGTTCGGTGAGGGTGAGAAGTATGTAAAAGCTGTTTTCTCTCTAGCCAGTAAAATTGCCCCAAGTGTTGTATTTGTTGATGAAGTTGACAGCATGTTGGGTCGAAGAGAAAATCCAGGAGAACATGAGGCCATGCGGAAGATGAAAAATGAATTTATGGTGAACTGGGATGGTTTGCGAACAAAGGACACAGAAAGGGTGCTGGTTCTTGCAGCCACAAACAGACCTTTTGACCTTGACGAAGCTGTTATTCGAAGGCTTCCTCGTAGGTTGATGGTGAATTTGCCAGATGCTCCAAACAGAGCAAAAATACTTAAAGTTATTTTGGCAAAAGAAGATTTGTCTCCAGAATTTGATTTTGATTCGGTTGCTAGTATGACAGATGGATACTCTGGGAGTGACCTTAAGAATCTTTGTGTTGCTGCTGCTCACCGTCCAATTAAAGAGATATTGGAGAAGGAAAAAAAGGAGCGAGCTGCAGCTCTCGCAGATGGCAGGCCTGCTCCAGCCCTTAGTGGAAGTGAGGATATTCGGCCTCTAAATATGGATGACTTTAAATATGCTCATGAACGGGTATGTGCGAGTGTTTCGTCGGAGTCTGTAAACATGACAGAGCTGTTACAGTGGAACGAGCTCTACGGTGAAGGGGGTTCTAGGAGAAAGAAGGCTCTTAGTTACTTCATGAATGGAGCTGACCATAGTTTGTCATCCGCGACTTGTGTTTTGTGCCATCAGTAA 3681 43.38 MVSTRRSGSLSGSNSKRSSSSEDKPSSPKRQKVENGCGSEKSMPAAENSKELFTAPTVDPGEHGPGGGPIAGVDVGEGVSSLKEDAAPAAVALTTPIAEGTSLVGDKPRSSFSSWSHYAAKQNPNFETTTPWCRLLSQFGQNSNVDIFSSNFTIGSSRGCNFPLKDHTISGTLCKIKHTQRDGSAVAVLESTGGKGSVMVNGLTVKKSTNCVLNSGDEVVFGALGNHAYIFQQLMNEVSVKGLDVQSGVGKFLQLGKRTGDPSAVAGASILASLSSLRQDISRWKPPSQTSSKTHQGAELPSKSVVHDAMELEIDAVEGNSNPEVRNDKAVDSSTTNRNLHPGSNPDAVIEAGNVMEERNQWIGELQPASTSGMSLRCAAFKEDVLAGIVDGRDLEVSFDNFPYYLSENTKNVLIAASFIHLKHKEHSKYTSELNTVNPRILLSGPAGSEIYQEMLAKALANYYGAKLLIFDSHSFLGGLSSKEAELLKDGINAAKSCSCSKQSMTSTETTKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNFLKIGDRVRFIGSASGGIYPTTSPSRGPPNGTRGKVVLTFDNNSSSKIGVKFDKLIPDGVDLGGYCEGGYGYFCNATDLRLENSGVEELDKILIDILFEAVFSESRNSPFILFMKDAEKSLVGNLDSYSTFKIRLEKLPDNVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKATKLLTKLFPNKVTIHMPQDEGLLVSWKHQLERDAETLKMKGNLNQLRVVLSRSGMDCEGLETLCIKDQTLTNESAEKVVGWALSHHLMQNLEADPDSRVLLSSESIQYGISILQAIQNESKCLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPEFDFDSVASMTDGYSGSDLKNLCVAAAHRPIKEILEKEKKERAAALADGRPAPALSGSEDIRPLNMDDFKYAHERVCASVSSESVNMTELLQWNELYGEGGSRRKKALSYFMNGADHSLSSATCVLCHQ 1226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4023665 4036047 - CcPI632755_03g003700.1 Cco03g0370 173729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0370 1226 Gene3D - 1077 1171 - -
Cco03g0370 1226 MobiDBLite consensus disorder prediction 1 21 - -
Cco03g0370 1226 MobiDBLite consensus disorder prediction 326 343 - -
Cco03g0370 1226 MobiDBLite consensus disorder prediction 503 549 - -
Cco03g0370 1226 CDD FHA 134 232 - -
Cco03g0370 1226 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 144 1209 IPR051701 GO:0005741(PANTHER)
Cco03g0370 1226 Pfam ATPase family associated with various cellular activities (AAA) 945 1075 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco03g0370 1226 MobiDBLite consensus disorder prediction 1 76 - -
Cco03g0370 1226 MobiDBLite consensus disorder prediction 22 36 - -
Cco03g0370 1226 MobiDBLite consensus disorder prediction 316 347 - -
Cco03g0370 1226 MobiDBLite consensus disorder prediction 282 299 - -
Cco03g0370 1226 SUPERFAMILY SMAD/FHA domain 131 229 IPR008984 GO:0005515(InterPro)
Cco03g0370 1226 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 903 1079 - -
Cco03g0370 1226 Gene3D - 903 1184 IPR027417 -
Cco03g0370 1226 Pfam FHA domain 153 222 IPR000253 GO:0005515(InterPro)
Cco03g0370 1226 SMART AAA_5 941 1078 IPR003593 GO:0016887(InterPro)
Cco03g0370 1226 MobiDBLite consensus disorder prediction 282 301 - -
Cco03g0370 1226 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 904 1185 IPR027417 -
Cco03g0370 1226 Pfam AAA+ lid domain 1099 1134 IPR041569 -
Cco03g0370 1226 CDD RecA-like_ATAD1 908 1074 - -
Cco03g0370 1226 ProSitePatterns AAA-protein family signature. 1048 1067 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco03g0370 1226 Gene3D - 131 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0370 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0025 Cco-Chr1:148469 Cco03g0370 Cco-Chr3:4023665 1.10E-78 dispersed
Cco01g0083 Cco-Chr1:643840 Cco03g0370 Cco-Chr3:4023665 1.10E-144 dispersed
Cco03g0370 Cco-Chr3:4023665 Cco09g0570 Cco-Chr9:5005112 0.00E+00 dispersed
Cco03g0370 Cco-Chr3:4023665 Cco07g0825 Cco-Chr7:19074383 7.10E-161 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g125 . . . . . . . . Cmo13g00833 Cmo18g00213 . . . . . . . . . . . . . . . . . . . . . Cone2ag0969 Cone16ag0021 . . . . Chy12g01174 Cme12g01596 . . . Bda14g01368 . Bpe15g00214 Bma03g01258 . . . . . Cma18g00322 . . Cpe09g00966 . . . . . . . . Cla03g00350 Cam03g0367 Cec03g0355 Cco03g0370 Clacu03g0367 Cmu03g0973 Cre03g0665 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002923 2 8 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 4 2 1 53