Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0373 ATGGCGACGACGACCACCAGTATTGGCGGCGGGGGCGGCGGTGGTGGTGGGGAGGATAGAGTTATGGCTACCGCTCAGCAGATAGTCAATAGCCTTAATACTCCTAAGGAGGTTCGAGACGACATGCTTTTGATCTTCTCTAGTTTTGACAATCGTCTTTCTAATATCACCAGTTTGGTCAACAGTGGGGATTCGAAGAAGGAGGAGGATCGATTTGAAGCTGCTGAGAAGGTGATTCTTCGTTGGGATTCTGGTCATGGAGCTTCTCGGAACTCGATTAATTGGGAGGACTCGCCAGATGAGGCGGCTGAGTACTTAACGGCGGTCGATGATATTATTCAGTGGATCGACGACTTGTCAATTCGTTCGGATTCTGCTGAGATCGTCGACCGTGCTGAGAACGCGATCCAGATCGCTATGTCCAGGCTTGAGGATGAGTTTCGTCATTTGTTGATTCGAAGCACCGTCCCTCTCGATGCTGAGCATCTCTACGGTTCAATTCGTAAGGTTTCCCTCTCTTTCGCTTCACACGACAGCGAAAATTCCGATGAATTTGAGTCGTTTGCCGGTGCTGACCGTGGTTCGGGAATCTACCATGAGCGTGGTGTTAGTTTAGGCGATGATTTGCGGGTCGATTTGATTCATCCTGACGCTGTTGTTGATTTGAAAGAGATCGCCGACCGGATGATTCGGTCTGGATACGAGAAAGAGTGTGTTAATGTGTATACTGGTGTCCGACGCGATGCTTTAGATGAGTGCTTGGTGGTTCTTGGACTTGAGAAGCTAAGTATTGAGGATGTTCAGAAAATTGACTGGAAAATCTTGGACGAGAAGATGAAGAAATGGATCCAAGCTGTTAAGGTCAGTGTTCGAGTACTTTTGACTGGCGAGAAGCGACTGTGTGACTATATCTTTAGTGGGTCTGATGACTCTGAGGAAGTTTGCTTCAATGAGACTGCAAAAGGGTGCATCAGACAATTACTAAATTTTGCAGAAGCCATTGCTATAGGGGAAAGGTCAGTGGAGAAGCTATTTCGTATTCTAGATATGTATGAAGCTCTGGAGTACGTTTTCCCTGATTTGCAGGCTATGGTCACTGATGAATTTGTGATTGAGGAGGCGCGAGGAGTACTTTCTAGGCTGGGAGAGGCCGCCAAAGGTACATTTGCTGAATTTGAGAATGCTGTTCGGAGTGAGACTTCTAAGAAAACAATGTTAAATGCTGAGATTCACCCGCTCACTCGTTATGTCATGAATTACTTAACATTGGTTGTGGTTTATAGTAAGACTCTGGATTCACTTTTAGAAGGTGACGATGAGGATTTGCATCATCTAGGGGGTGATGGTGCTGATAATTTGGAGTTAGAAACTATGTCTCCATTAGCTCGTCGTCTGTTTTCATTGATATCAACACTGGAGACCAATCTAGAGAGAAAATCCAAACTCTATGGTGATGATGCAATACAATATATATTTCTCATGAACAATATACAATATATTGTGCAGAAAGTGAAGGATTCTGAGCTTGGAAAGCTCTTGGGTGACCGCTGGGTTCGTAAACGCCGTGGCCAAGTTCGCATTTATGCGACGAACTATCTTAGGGCATCTTGGGGCAAACTATTGTCTTTCTTGAAGGAGGAAGGTACTGGTGGGAGCTCCAATAGTGCCCTGAAACTAGCTACTTTAAAGGAAAAATTCAAAAATTTCAATGCTGGCTTTGAGGAAATCTATAGAGTTCAGACAGGTTGGAAGGTTCCAGATGCTCAACTACGAGAAGAGCTCCGAATTTCAGTGTCTGCAAAAGCGCTACCTGCATATCGTGCCTTCTTGGGAAGACATGGAGGTCAGTTAGAGAATACAAGACATGCTGGGAGAGATACTGAACCGACTCAATTGACAGCTTTGGTTTTTTGA 1914 45.09 MATTTTSIGGGGGGGGGEDRVMATAQQIVNSLNTPKEVRDDMLLIFSSFDNRLSNITSLVNSGDSKKEEDRFEAAEKVILRWDSGHGASRNSINWEDSPDEAAEYLTAVDDIIQWIDDLSIRSDSAEIVDRAENAIQIAMSRLEDEFRHLLIRSTVPLDAEHLYGSIRKVSLSFASHDSENSDEFESFAGADRGSGIYHERGVSLGDDLRVDLIHPDAVVDLKEIADRMIRSGYEKECVNVYTGVRRDALDECLVVLGLEKLSIEDVQKIDWKILDEKMKKWIQAVKVSVRVLLTGEKRLCDYIFSGSDDSEEVCFNETAKGCIRQLLNFAEAIAIGERSVEKLFRILDMYEALEYVFPDLQAMVTDEFVIEEARGVLSRLGEAAKGTFAEFENAVRSETSKKTMLNAEIHPLTRYVMNYLTLVVVYSKTLDSLLEGDDEDLHHLGGDGADNLELETMSPLARRLFSLISTLETNLERKSKLYGDDAIQYIFLMNNIQYIVQKVKDSELGKLLGDRWVRKRRGQVRIYATNYLRASWGKLLSFLKEEGTGGSSNSALKLATLKEKFKNFNAGFEEIYRVQTGWKVPDAQLREELRISVSAKALPAYRAFLGRHGGQLENTRHAGRDTEPTQLTALVF 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4055962 4058863 - CcPI632755_03g003730.1 Cco03g0373 173732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0373 637 SUPERFAMILY Cullin repeat-like 72 622 IPR016159 -
Cco03g0373 637 Gene3D Exocyst complex component Exo70 85 632 - -
Cco03g0373 637 PANTHER EXOCYST COMPLEX PROTEIN EXO70 55 623 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cco03g0373 637 MobiDBLite consensus disorder prediction 1 20 - -
Cco03g0373 637 Pfam Exocyst complex component Exo70 N-terminal 72 152 - -
Cco03g0373 637 Pfam Exo70 exocyst complex subunit C-terminal 280 620 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0373 K07195 - - csv:101212753 1143.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0373 Cco-Chr3:4055962 Cco03g1393 Cco-Chr3:27829460 3.60E-241 dispersed
Cco03g0373 Cco-Chr3:4055962 Cco02g2189 Cco-Chr2:34543628 3.80E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g116 . Blo16g00265 . . Bpe12g00483 Bpe13g00204 Bma06g00256 . Cmo13g00835 . Cma10g00065 Cma11g00035 Car10g00053 Car11g00032 . Cpe20g00308 Cpe04g01614 . . . . . . . . . . . . . . . . . Cone19ag0206 . . Chy12g01170 Cme12g01592 . . Bda11g01602 Bda14g01366 . Bpe15g00216 Bma03g01256 . Sed08g2438 Cmo10g00061 Cmo11g00037 Cma13g00803 Cma18g00319 Car13g00651 Car18g00228 Cpe09g00962 . Bhi08g01486 Tan05g2961 Cmetu04g0927 Lac10g0582 Hepe07g2107 . . Cla03g00352 Cam03g0370 Cec03g0358 Cco03g0373 Clacu03g0370 Cmu03g0976 Cre03g0668 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g2453 . 12 653 EXO70 exocyst subunit family AT5G03540 75.7 4.0e-283 970.7
Cco04g1257 . 1 638 EXO70 exocyst subunit family AT5G03540 71.0 7.5e-266 913.3
Cco04g1257 . 1 638 EXO70 exocyst subunit family AT5G52340 80.3 8.3e-299 1022.7
Cco05g2453 . 14 653 EXO70 exocyst subunit family AT5G52340 74.2 5.6e-271 930.2
Cco04g1257 . 145 631 EXO70 exocyst subunit family AT5G52350 63.9 2.2e-176 615.9
Cco05g2453 . 149 653 EXO70 exocyst subunit family AT5G52350 59.1 3.0e-165 578.9
Cco03g0049 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 3.6e-246 847.8
Cco03g0049 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 1.0e-173 607.1
Cco07g1615 . 63 676 EXO70 exocyst subunit family AT5G13150 53.3 1.3e-174 610.1
Cco01g0910 . 109 720 EXO70 exocyst subunit family AT5G13990 54.0 1.5e-187 653.3
Cco07g1527 . 9 609 EXO70 exocyst subunit family AT1G72470 65.2 4.7e-217 751.1
Cco07g1527 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 1.3e-208 723.0
Cco07g1527 . 9 608 EXO70 exocyst subunit family AT3G14090 64.4 8.4e-219 756.9
Cco03g1393 . 27 664 EXO70 exocyst subunit family AT5G50380 62.1 3.2e-227 785.0
Cco03g0373 . 18 630 EXO70 exocyst subunit family AT5G50380 61.1 4.9e-212 734.6
Cco08g1418 . 13 682 EXO70 exocyst subunit family AT4G31540 73.6 6.7e-294 1006.5
Cco10g2071 . 35 630 EXO70 exocyst subunit family AT3G09520 56.1 5.0e-179 624.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74