Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0391 ATGGATTTCCTCAACAGTTTCTTAAACCTTATACTTCCACCAATATCTCTAACAGCCTTCTTCTTCTTTCTCCCAATTTACTTGTTTTTCAAGTCCCTCTCATTCATAACAAGCTCCATCTTCAGCGAAGATGTCGCCGGAAAAGTTGTTCTCATCACCGGAGCATCCTCAGGCATCGGCGAGCATCTGGCATACGAATACGCTAAAAGAGGAGCTTATTTGGCGTTGGTTGCCAGAAGAGAAAACCGGCTCGAGGAAGTGGCCGCCGTGGCAGAGTCTATAGGCTCACCCTACGCCCTCGTAATTCCGGCGGATATTTCCAAGGTTGAAGATTGTAAACGATGTATCCAAACCACCGTCACCCACTTCCGACGACTGGATCATTTGGTAAACAATGCGGGGGTATCCAGCATCAACCTGTTTGAAGAATACGACAACCTCCAAAATGCTGTCCCAGTAATGGACGTAAACTTCTGGGGAATGGTATATTGTAGTTACTATGGGATTCCACACTTAAAGCAAAGCAGAGGGAAGATCATCGGAATTGCTTCCGCCGCCGCATGGCTACCTGCCCCCAGGCTCAGCTTCTACACCTCCAGCAAAGCAGCAGTGATAAGCTTCTACGAGACACTGAGAGTGGAAGTTGGAAGAGAGATTGGAATTACGATCGTGACCCCAGGGCTGGTTGAATCAGAGATGACACAAGGCAAATTCATCTCCAAAGATGGCCGTTTATACCTTGACCAACAACTTAGAGACGCTACGGTGAGCATAATGCCGATTATGCCAATCAACGACGCAGTGAAGGGGATCTTAAGGAGCGTGTGCAGGGGAGACCGGTACGCGACTGAGCCGCGGTGGATGAGGATGGCGTTTTACTATAAGGCGGTGTGGCCTGAGTTAGTAGAGTGGTTTAATTACTTGGTTACTATGTCAGGATCATCTAATTCTCCCACAAACACTTTTGGGAAAAGGCTGCTTCAGCTTAGTGGATTGAAGAAATGGTTTTATCCGGAGTCTGTTCGATCCCAGCAATTGGACCTCAAATCCAACTGA 1056 47.63 MDFLNSFLNLILPPISLTAFFFFLPIYLFFKSLSFITSSIFSEDVAGKVVLITGASSGIGEHLAYEYAKRGAYLALVARRENRLEEVAAVAESIGSPYALVIPADISKVEDCKRCIQTTVTHFRRLDHLVNNAGVSSINLFEEYDNLQNAVPVMDVNFWGMVYCSYYGIPHLKQSRGKIIGIASAAAWLPAPRLSFYTSSKAAVISFYETLRVEVGREIGITIVTPGLVESEMTQGKFISKDGRLYLDQQLRDATVSIMPIMPINDAVKGILRSVCRGDRYATEPRWMRMAFYYKAVWPELVEWFNYLVTMSGSSNSPTNTFGKRLLQLSGLKKWFYPESVRSQQLDLKSN 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4221561 4223958 + CcPI632755_03g003910.1 Cco03g0391 173750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0391 351 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Cco03g0391 351 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Cco03g0391 351 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Cco03g0391 351 Gene3D - 32 313 - -
Cco03g0391 351 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Cco03g0391 351 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Cco03g0391 351 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Cco03g0391 351 PRINTS Glucose/ribitol dehydrogenase family signature 217 234 IPR002347 -
Cco03g0391 351 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Cco03g0391 351 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491(InterPro)
Cco03g0391 351 PANTHER RETINOL DEHYDROGENASE-RELATED 46 306 - GO:0005829(PANTHER)|GO:0016491(PANTHER)
Cco03g0391 351 Pfam short chain dehydrogenase 48 237 IPR002347 -
Cco03g0391 351 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 308 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0391 K22418 - - csv:101220214 586.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0389 Cco-Chr3:4204639 Cco03g0391 Cco-Chr3:4221561 6.10E-101 dispersed
Cco03g0391 Cco-Chr3:4221561 Cco08g0126 Cco-Chr8:1983811 9.30E-66 dispersed
Cco03g0390 Cco-Chr3:4217449 Cco03g0391 Cco-Chr3:4221561 1.60E-133 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g77 . . . . . . . . Cmo13g00852 Cmo18g00231 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0003 . . Lsi02g00519 Csa01g00981 Chy12g01151 Cme12g01572 . . . Bda14g01347 . Bpe15g00229 . . . . . Cma13g00821 Cma18g00304 . . Cpe09g00950 . Bhi08g01521 Tan05g2995 Cmetu12g0843 Lac10g0601 . . . Cla03g00370 Cam03g0390 Cec03g0376 Cco03g0391 Clacu03g0389 Cmu03g0994 Cre03g0686 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000732 2 6 3 2 1 3 2 3 3 3 1 3 4 4 4 4 3 1 2 3 3 5 4 4 3 3 4 2 4 4 93