Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0396 ATGGGTTGCGTTCTTGGCAGACAAACCGCCGACGCTCGCCTGGGCACATCCGGACCTCCCCGTCGCCGCCGGACCACGGATCACCTCTCTCATATCGACGGAGTTAATGGCGACAGAGTTAAGAAACAGACGACTACGTTGGAAAACCGGGGAGTTCGGCAGGACCTGGATTCCTTCTCCGTAGAGCGCCGGAGGCCTTCGCCGAGCCTTTGCCAGAGGAATGAGCAAGGTTGGCCGTCGTGGCTGCTGGCGGTCGCTGGCGAGGTGATCCAAGGATGGACGCCTCGTCGAGCCAATACGTTCGAGAAACTTGCTAAGATTGGGCAAGGGACGTATAGTAATGTGTACAAGGCGAGGGATCTTATTACTGGCAAAATTGTTGCTCTGAAGAAGGTTAGGTTTGATAATTTAGAACCGGAGAGCGTAAGGTTTATGGCTAGAGAGATTTTGGTTCTGAAACGCCTCGATCATCCCAATGTGCTTAAGCTCGAAGGCTTAGTTACCTCGAGAATGTCGTGTAGTCTTTACTTAGTGTTTGAGTATATGGAACACGACCTCGCCGGACTTGCTGCCGGTCAAGGAGTCAAATTCACGGAGCCTCAGGTCAAATGCTATATGAAGCAACTATTGTCCGGGCTTGAGCACTGTCACAACCGAGGTGTATTGCATCGTGATATTAAAGGTTCCAATTTGCTAATTGATAACGAAGGAATACTGAAAATAGCTGATTTTGGTTTAGCTACTTTCTTTGATCCTGAACAGAACCAGCATATGACCAGTCGAGTAGTAACCCTTTGGTACCGTCCTCCTGAATTATTACTTGGAGCGACTCTTTATGGTACAGGGGTTGATCTTTGGAGTGCTGGCTGCATCTTGGCCGAGCTGCTCGCTGGGAGGCCAATCATGCCAGGAAGGACAGAGGTTGAACAACTTCACAAGATATTTAAATTATGTGGTTCTCCATCTGAAGATTACTGGAAGAAGTACAAATTGCCAAATGCAACTCTATTTAAACCCCAACAACCATACAAACGCTGCATTGCTGAAACGTTCAAAGATTTTCCATCTTCTTCTCTACCTCTTATCGAATCTCTCCTTTCAATGGACCCCGATGGGCGAGGTACTGCCACTGCTGCTTTGAATAGCAAATTCTTTACTACGGAGCCTCTTGCTTGTGAACCATCAAGTCTACCTAAATATCCTCCTAGCAAAGAATTGGATGTAAAGTTGAGAGATGAGGAAGCTAGAAGGCAAAGAGGTCTAAGTGGGAAAGCAACAGGTGATGGTGGAGGCAGGAGAGTAAGAGTACGGGATCGGGTTGGTCGGGCTGTCCCGGCACCTGAAGCTAATGCAGAGATACAAGCAAACTTAGATAGGTGGAGAAATGTGACAAATGCAAATGGTAAGAGCAAGAGCGAGAAGTTTCCCCCACCTCATCAAGATGGGGCAGTGGGGTACCCGCCACATGAGATATCCCAGAGGGGCCATCTTTCATTTGGTGCAGCTGATTCTTCATTCAGCTCCTCCATTTTTAGTTCAAAGTCTGGTTCTGTTAAAAGTTTAGCAGCTCCTGGGGGACCGTCTCGGAGAAAGAAAGCAGATAAAGATAACCCCTCGATGTCTTCATCTCGAAAATTCATCCGTGCATTGAAGCCATCAATCGGGTTATCAATGGATCTGTTGTTTAGGGGTAAATAA 1698 47.64 MGCVLGRQTADARLGTSGPPRRRRTTDHLSHIDGVNGDRVKKQTTTLENRGVRQDLDSFSVERRRPSPSLCQRNEQGWPSWLLAVAGEVIQGWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVRFMAREILVLKRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPEQNQHMTSRVVTLWYRPPELLLGATLYGTGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEDYWKKYKLPNATLFKPQQPYKRCIAETFKDFPSSSLPLIESLLSMDPDGRGTATAALNSKFFTTEPLACEPSSLPKYPPSKELDVKLRDEEARRQRGLSGKATGDGGGRRVRVRDRVGRAVPAPEANAEIQANLDRWRNVTNANGKSKSEKFPPPHQDGAVGYPPHEISQRGHLSFGAADSSFSSSIFSSKSGSVKSLAAPGGPSRRKKADKDNPSMSSSRKFIRALKPSIGLSMDLLFRGK 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4291563 4295131 - CcPI632755_03g003960.1 Cco03g0396 173755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0396 565 FunFam probable serine/threonine-protein kinase At1g54610 184 425 - -
Cco03g0396 565 PANTHER CELL DIVISION PROTEIN KINASE 100 385 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cco03g0396 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0396 565 SUPERFAMILY Protein kinase-like (PK-like) 94 390 IPR011009 -
Cco03g0396 565 ProSiteProfiles Protein kinase domain profile. 101 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0396 565 Gene3D Transferase(Phosphotransferase) domain 1 184 423 - -
Cco03g0396 565 Gene3D Phosphorylase Kinase; domain 1 88 183 - -
Cco03g0396 565 Pfam Protein kinase domain 101 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0396 565 MobiDBLite consensus disorder prediction 1 53 - -
Cco03g0396 565 MobiDBLite consensus disorder prediction 511 545 - -
Cco03g0396 565 FunFam probable serine/threonine-protein kinase At1g54610 88 183 - -
Cco03g0396 565 CDD STKc_CDK9_like 101 385 - -
Cco03g0396 565 MobiDBLite consensus disorder prediction 414 489 - -
Cco03g0396 565 MobiDBLite consensus disorder prediction 457 471 - -
Cco03g0396 565 MobiDBLite consensus disorder prediction 17 48 - -
Cco03g0396 565 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524(InterPro)
Cco03g0396 565 SMART serkin_6 101 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0396 Cco-Chr3:4291563 Cco05g0679 Cco-Chr5:5590154 7.70E-203 dispersed
Cco03g0396 Cco-Chr3:4291563 Cco02g1754 Cco-Chr2:30303719 1.50E-185 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86639 PF00069 Pkinase 1.70E-67 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0396 K08819 - csv:101205716 1004.59