Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0396 | ATGGGTTGCGTTCTTGGCAGACAAACCGCCGACGCTCGCCTGGGCACATCCGGACCTCCCCGTCGCCGCCGGACCACGGATCACCTCTCTCATATCGACGGAGTTAATGGCGACAGAGTTAAGAAACAGACGACTACGTTGGAAAACCGGGGAGTTCGGCAGGACCTGGATTCCTTCTCCGTAGAGCGCCGGAGGCCTTCGCCGAGCCTTTGCCAGAGGAATGAGCAAGGTTGGCCGTCGTGGCTGCTGGCGGTCGCTGGCGAGGTGATCCAAGGATGGACGCCTCGTCGAGCCAATACGTTCGAGAAACTTGCTAAGATTGGGCAAGGGACGTATAGTAATGTGTACAAGGCGAGGGATCTTATTACTGGCAAAATTGTTGCTCTGAAGAAGGTTAGGTTTGATAATTTAGAACCGGAGAGCGTAAGGTTTATGGCTAGAGAGATTTTGGTTCTGAAACGCCTCGATCATCCCAATGTGCTTAAGCTCGAAGGCTTAGTTACCTCGAGAATGTCGTGTAGTCTTTACTTAGTGTTTGAGTATATGGAACACGACCTCGCCGGACTTGCTGCCGGTCAAGGAGTCAAATTCACGGAGCCTCAGGTCAAATGCTATATGAAGCAACTATTGTCCGGGCTTGAGCACTGTCACAACCGAGGTGTATTGCATCGTGATATTAAAGGTTCCAATTTGCTAATTGATAACGAAGGAATACTGAAAATAGCTGATTTTGGTTTAGCTACTTTCTTTGATCCTGAACAGAACCAGCATATGACCAGTCGAGTAGTAACCCTTTGGTACCGTCCTCCTGAATTATTACTTGGAGCGACTCTTTATGGTACAGGGGTTGATCTTTGGAGTGCTGGCTGCATCTTGGCCGAGCTGCTCGCTGGGAGGCCAATCATGCCAGGAAGGACAGAGGTTGAACAACTTCACAAGATATTTAAATTATGTGGTTCTCCATCTGAAGATTACTGGAAGAAGTACAAATTGCCAAATGCAACTCTATTTAAACCCCAACAACCATACAAACGCTGCATTGCTGAAACGTTCAAAGATTTTCCATCTTCTTCTCTACCTCTTATCGAATCTCTCCTTTCAATGGACCCCGATGGGCGAGGTACTGCCACTGCTGCTTTGAATAGCAAATTCTTTACTACGGAGCCTCTTGCTTGTGAACCATCAAGTCTACCTAAATATCCTCCTAGCAAAGAATTGGATGTAAAGTTGAGAGATGAGGAAGCTAGAAGGCAAAGAGGTCTAAGTGGGAAAGCAACAGGTGATGGTGGAGGCAGGAGAGTAAGAGTACGGGATCGGGTTGGTCGGGCTGTCCCGGCACCTGAAGCTAATGCAGAGATACAAGCAAACTTAGATAGGTGGAGAAATGTGACAAATGCAAATGGTAAGAGCAAGAGCGAGAAGTTTCCCCCACCTCATCAAGATGGGGCAGTGGGGTACCCGCCACATGAGATATCCCAGAGGGGCCATCTTTCATTTGGTGCAGCTGATTCTTCATTCAGCTCCTCCATTTTTAGTTCAAAGTCTGGTTCTGTTAAAAGTTTAGCAGCTCCTGGGGGACCGTCTCGGAGAAAGAAAGCAGATAAAGATAACCCCTCGATGTCTTCATCTCGAAAATTCATCCGTGCATTGAAGCCATCAATCGGGTTATCAATGGATCTGTTGTTTAGGGGTAAATAA | 1698 | 47.64 | MGCVLGRQTADARLGTSGPPRRRRTTDHLSHIDGVNGDRVKKQTTTLENRGVRQDLDSFSVERRRPSPSLCQRNEQGWPSWLLAVAGEVIQGWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVRFMAREILVLKRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPEQNQHMTSRVVTLWYRPPELLLGATLYGTGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEDYWKKYKLPNATLFKPQQPYKRCIAETFKDFPSSSLPLIESLLSMDPDGRGTATAALNSKFFTTEPLACEPSSLPKYPPSKELDVKLRDEEARRQRGLSGKATGDGGGRRVRVRDRVGRAVPAPEANAEIQANLDRWRNVTNANGKSKSEKFPPPHQDGAVGYPPHEISQRGHLSFGAADSSFSSSIFSSKSGSVKSLAAPGGPSRRKKADKDNPSMSSSRKFIRALKPSIGLSMDLLFRGK | 565 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4291563 | 4295131 | - | CcPI632755_03g003960.1 | Cco03g0396 | 173755 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0396 | 565 | FunFam | probable serine/threonine-protein kinase At1g54610 | 184 | 425 | - | - | |
Cco03g0396 | 565 | PANTHER | CELL DIVISION PROTEIN KINASE | 100 | 385 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Cco03g0396 | 565 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 221 | 233 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco03g0396 | 565 | SUPERFAMILY | Protein kinase-like (PK-like) | 94 | 390 | IPR011009 | - | |
Cco03g0396 | 565 | ProSiteProfiles | Protein kinase domain profile. | 101 | 385 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0396 | 565 | Gene3D | Transferase(Phosphotransferase) domain 1 | 184 | 423 | - | - | |
Cco03g0396 | 565 | Gene3D | Phosphorylase Kinase; domain 1 | 88 | 183 | - | - | |
Cco03g0396 | 565 | Pfam | Protein kinase domain | 101 | 385 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0396 | 565 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
Cco03g0396 | 565 | MobiDBLite | consensus disorder prediction | 511 | 545 | - | - | |
Cco03g0396 | 565 | FunFam | probable serine/threonine-protein kinase At1g54610 | 88 | 183 | - | - | |
Cco03g0396 | 565 | CDD | STKc_CDK9_like | 101 | 385 | - | - | |
Cco03g0396 | 565 | MobiDBLite | consensus disorder prediction | 414 | 489 | - | - | |
Cco03g0396 | 565 | MobiDBLite | consensus disorder prediction | 457 | 471 | - | - | |
Cco03g0396 | 565 | MobiDBLite | consensus disorder prediction | 17 | 48 | - | - | |
Cco03g0396 | 565 | ProSitePatterns | Protein kinases ATP-binding region signature. | 107 | 130 | IPR017441 | GO:0005524(InterPro) | |
Cco03g0396 | 565 | SMART | serkin_6 | 101 | 385 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0396 | Cco-Chr3:4291563 | Cco05g0679 | Cco-Chr5:5590154 | 7.70E-203 | dispersed | |
Cco03g0396 | Cco-Chr3:4291563 | Cco02g1754 | Cco-Chr2:30303719 | 1.50E-185 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86639 | PF00069 | Pkinase | 1.70E-67 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0396 | K08819 | - | csv:101205716 | 1004.59 |