Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0397 ATGGCAGCTTTTTCTTATCAATACCAACCCTTTCTTCTTGACTCCATTTTCTTGCCCAACAATCCTCTCAAAATGGGAGGCTTTTTTGATGACCAAAATTTCAACACAAATTGTTTCTCTCAATTTTACCCTCAACACCAACAACAACAACAACCCATTTACCATTTTCCTGACCTCTCTAAACAAAGCCCTGAATCTTCCACTTTGGTCGACCGATCCGACAGCGCCGAACCGCCGGTCGGAAATCAGTTGAAACCGGCTGTTACGGTTACCGTAACTTCCCCTTGTACTAAGAAAAGGAAGAGCCGGAATAATTCTTCCGCCACCTCCGCTCAATCCAAGGGTACTACTGAGAGCACTGCGAAAAAGCAGAAAAGTAAAGGGGAATACGAAGGGAAAGAAAAAGATCATCAAAAGGCTAAAAATGGGAAGAAATTAGAGGAGAAAAAAATTTTAGAAGAAGGTGGTGCAACCACTGGTTACATTCATGTTAGAGCTAGAAGGGGCCAAGCCACTGACAGCCACAGTCTTGCTGAGAGGGTGAGAAGGGAGAAGATTAGCGAAAGGATGAAGACATTGCAACGCCTTGTTCCCGGTTGCGACAAGGTTACAGGAAAGGCCCTTATGTTGGATGAAATTATCAATTATGTTCAGTCCCTACAAAATCAAGTTGAGTTTCTCTCCATGAAACTCGCTTCTTTGAACCCAATTTTCTTCGACTTCAGAATGGATTTGGACGGCCTAATGATCCAACCAGAGATGACGTCGTTGAGTAGCATAACACCACAACTTCCAGCGATGGCACAATGTAGCATTGTGGCACCACCGGCGTTGATCGACACGACCCCTTCGACGACTCCATCTCCGGCAATCTCCGCCGCAAATAATTATCCCTTAATGGACTCTTCAGCTAATTTATTTCTATTTCAACAAGGGATAAGCCCAAATAATGGCTACTCCCAATCGTCACAGGATAACGTTAAAGTTTCATCATGGGATGTCGAAGACCATAAACGAAAGCTTCTTATTTCATCAGGAATTGGCGACAACGTATGTTACTTCCACTAA 1068 43.73 MAAFSYQYQPFLLDSIFLPNNPLKMGGFFDDQNFNTNCFSQFYPQHQQQQQPIYHFPDLSKQSPESSTLVDRSDSAEPPVGNQLKPAVTVTVTSPCTKKRKSRNNSSATSAQSKGTTESTAKKQKSKGEYEGKEKDHQKAKNGKKLEEKKILEEGGATTGYIHVRARRGQATDSHSLAERVRREKISERMKTLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPIFFDFRMDLDGLMIQPEMTSLSSITPQLPAMAQCSIVAPPALIDTTPSTTPSPAISAANNYPLMDSSANLFLFQQGISPNNGYSQSSQDNVKVSSWDVEDHKRKLLISSGIGDNVCYFH 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4315485 4317266 - CcPI632755_03g003970.1 Cco03g0397 173756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0397 355 SMART finulus 176 226 IPR011598 GO:0046983(InterPro)
Cco03g0397 355 MobiDBLite consensus disorder prediction 57 73 - -
Cco03g0397 355 MobiDBLite consensus disorder prediction 57 152 - -
Cco03g0397 355 CDD bHLH_AtBPE_like 160 245 - -
Cco03g0397 355 Pfam Helix-loop-helix DNA-binding domain 174 221 IPR011598 GO:0046983(InterPro)
Cco03g0397 355 MobiDBLite consensus disorder prediction 86 119 - -
Cco03g0397 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 220 IPR011598 GO:0046983(InterPro)
Cco03g0397 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 236 IPR036638 GO:0046983(InterPro)
Cco03g0397 355 MobiDBLite consensus disorder prediction 120 152 - -
Cco03g0397 355 Gene3D - 167 237 IPR036638 GO:0046983(InterPro)
Cco03g0397 355 FunFam Basic helix-loop-helix transcription factor 167 239 - -
Cco03g0397 355 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 51 284 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0397 Cco-Chr3:4315485 Cco09g0834 Cco-Chr9:7790126 1.20E-33 dispersed
Cco03g0397 Cco-Chr3:4315485 Cco06g2026 Cco-Chr6:30250933 3.00E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58907 PF00010 HLH 6.90E-07 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0397 - - - 0.0