Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0401 ATGGCGGAGCCTGTGGAAGACAACGACGGAACCAACAGCAAGGAAGAGCAAGAGGAGGCTTTGGTCGCTCTCATCGATCATCGTTGCCGTGAAGTTCAAAATCTCAAGCAGCGTATCTCCTACTACACTTCACAGCTTGAAGAAGCGGAGAAGAGATTGCGCGATTCAGAATTTAAATTGGCCCGGCTTCGACGTCAGGGTAATGCAGTGCCATCCAGAGATTCTCTGAAAAGTAGAGCTGTAAGTGTGAAAGTGGAGCAAACGGTAAATGAAGGTAGTAAACCCCAGCCAGTGTCGAAACCAGAGCTTGTGATACCGGCTGTAGTTCCAAAGACTTCACAGAACAGTGCGTTGGCTGGGAATGGAGCGAAGACTTCAAATAGCTCTAGGGCTCAATCAAGTCCTTCTCATATTAAGAATGTAACTAAAGTTGAAGGGGACAAAAATATTGGCAACTCTTCTCTTCGAGAAACTTCGAACACTTCTGATAGAGGGACAAAACGGAAGCTTGAACAGCAGTTCAAGGAGCATAAAGAGTTGATTCCATTAATACGTAGCAGCTCATCACCTTCTCAAATCCGCTGCGTTGGGAGCAATCACATCTCCAGTCAGCATAAAAGGAAGTTGAGAAGTCTCATCTCATGCCCAGTAAATGAACAGCTATTTGTGACCAGTGCCCTGGATGGAGTAGTCAACTTGTGGCAGTTACAGGCTAGAGGGTCAAGTGCCTCTCTACTTAGTTCCGCCGACTGTGTATCTCCAAAACAAAGGAGATGGCCGGAAGATATGGCCTGGCATCCAGAGGGCAATCGTGTATTTCTTGTTTACAGTGCTGATGGTGGGGACTCTCAGGTCTCAATCATGAATCTGAACAAAAGTGAAGGGAAAGCTCGGGTTACTTTCCTTGAGGATAAACCTCACGTTAAGGGCATTATCAACAGCATAATTTTCTTGCCTTGGGATAGCACGTCTTTTATCACTGGTGGAAGTGATCATGCTGTCATACAATGGAAAGAGGGAGATGGAGGGAAAATATGGAAGCCAAAGGCGTTGCACAGAAATCTGCACTCTTCAGCAGTGATGGGAGTTGCAGGGATGCAGCAGAAGCCAATCGTACTTTCTGCAGGGGCAGACAAGAGAATACTTGGGTTTGACGTAAATGTTGGAAGAACAGAGTTTAAGCATCAGATAGAAAGCAAATGCATGAGTATATTGCCTAATCCGTGCGATTTTAACCTATTTATGGTCCAAACAGGCACTCCAGGAAGGCAACTTCGGTTATATGATATCAGACTTAGGCAGACAGAACTACATGCCTTCGGGTGGGAGCAAAAGAGCAGTGAATCTCAGTCAGCATTGATAAATCAAGCTTGGTCGCCTGATGGTTTGATTCTAACATCTGGCTCCGCCGACCCTGTGATCCATCTGTTTGATATCCGGTATAATTTGCACAAGCCTTCTCAATCCATAAGAGCTCATCAGAAACGAGTCTTCAAGGCCGTATGGCTTCAATCTCTCCCCCTTCTTATTTCCATATCTTCTGATCTCAACATTGGATTGCACAAAACAGCGTGA 1575 45.59 MAEPVEDNDGTNSKEEQEEALVALIDHRCREVQNLKQRISYYTSQLEEAEKRLRDSEFKLARLRRQGNAVPSRDSLKSRAVSVKVEQTVNEGSKPQPVSKPELVIPAVVPKTSQNSALAGNGAKTSNSSRAQSSPSHIKNVTKVEGDKNIGNSSLRETSNTSDRGTKRKLEQQFKEHKELIPLIRSSSSPSQIRCVGSNHISSQHKRKLRSLISCPVNEQLFVTSALDGVVNLWQLQARGSSASLLSSADCVSPKQRRWPEDMAWHPEGNRVFLVYSADGGDSQVSIMNLNKSEGKARVTFLEDKPHVKGIINSIIFLPWDSTSFITGGSDHAVIQWKEGDGGKIWKPKALHRNLHSSAVMGVAGMQQKPIVLSAGADKRILGFDVNVGRTEFKHQIESKCMSILPNPCDFNLFMVQTGTPGRQLRLYDIRLRQTELHAFGWEQKSSESQSALINQAWSPDGLILTSGSADPVIHLFDIRYNLHKPSQSIRAHQKRVFKAVWLQSLPLLISISSDLNIGLHKTA 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4353556 4359095 + CcPI632755_03g004010.1 Cco03g0401 173760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0401 524 SUPERFAMILY WD40 repeat-like 210 518 IPR036322 GO:0005515(InterPro)
Cco03g0401 524 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 8 523 - -
Cco03g0401 524 Coils Coil 32 66 - -
Cco03g0401 524 MobiDBLite consensus disorder prediction 115 160 - -
Cco03g0401 524 Pfam WD domain, G-beta repeat 457 478 IPR001680 GO:0005515(InterPro)
Cco03g0401 524 Gene3D - 402 524 IPR015943 GO:0005515(InterPro)
Cco03g0401 524 SMART WD40_4 440 478 IPR001680 GO:0005515(InterPro)
Cco03g0401 524 SMART WD40_4 483 522 IPR001680 GO:0005515(InterPro)
Cco03g0401 524 SMART WD40_4 192 235 IPR001680 GO:0005515(InterPro)
Cco03g0401 524 SMART WD40_4 295 338 IPR001680 GO:0005515(InterPro)
Cco03g0401 524 SMART WD40_4 347 385 IPR001680 GO:0005515(InterPro)
Cco03g0401 524 MobiDBLite consensus disorder prediction 115 168 - -
Cco03g0401 524 Gene3D - 160 401 IPR015943 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0401 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0401 Cco-Chr3:4353556 Cco06g2043 Cco-Chr6:30343396 2.50E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g19 . . . Bda15g00699 Bpe12g00456 . . . . . . . . . . Cpe20g00288 . Bhi02g00609 . . . . . . . . . . . . . . . . . Lsi02g00529 Csa01g00992 Chy12g01142 Cme12g01560 . . . . . . . Bma08g00282 Sed01g1537 . . . . Car13g00674 . . . Bhi08g01542 Tan05g3013 Cmetu12g1640 Lac10g0615 Hepe07g2080 . . Cla03g00381 Cam03g0400 Cec03g0386 Cco03g0401 Clacu03g0399 Cmu03g1004 Cre03g0696 . Csa01g00007 Chy02g02707 Cme02g02115
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002709 1 5 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 1 2 2 2 2 2 3 2 1 57