Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0407 ATGAAGTGGGGTGTTCTTCTTGTCCTTATTCTGGCCTCCGCCGCCGTGTCGTGGGCCGACAAAGATTTGGAGGATAACGGAGAAGAATACTCGAGCCTTGAGGTTCCGCAGTTGCAGGAGTTTTCAGCTTTCGGGGACTTTCTTTCTTATGGGTTCTACCAGAAAAGTTGTCCCGGCGTCGACGGCATCATTCACCGTAAACTCAAGCAGTGGTTCGATAAAGATAACTCCATCGCCGCCGCCCTCTTGAGATTGCACTTCCATGACTGCGTCGTTAGGGGCTGCGACGGTTCTATTCTTCTAGATTATGAGGGAAGCGAGAGAAGGGCTCCGGCAAGCAAGACGCTTAGAGGTTTCGAAGTGATCGACGACATCAAAGCTGAGTTAGAGAAACAGTGCCCTAAAACAGTTTCTTGCGCAGATATTCTAACCGCCGCCGCCAGAGAAGCCACCGTCCTCATCGGCGGCCCATATTGGATGGTACCTTATGGAAGAAGAGACGGAGTGGATTCCATTGCCAAAGAAACTGAGTTAGTGCCATTGGGTATTGAAGACATCACTTCTCTCATTGAACTTTACCAATCTCTCGGCTTGAATGTCTTAGATTTGGTCGTTCTTTCAGGGGCACACACGATTGGAAGGGCAACATGTGGAGCGATACAAAACAGGCTTTACAATTATAGCGCAACGGGGAAGCCAGACCCATCGTTGAGCCCAAAATACTTAAACTTCTTGAGAAGAAAGTGCCGATGGGCATCGGACTACGTGGATCTTGACGCAACAACGCCCAACACATTCGACAACGCCTACTACTCTAATCTCCCAAAGAAGATGGGTCTTTTGTCAACTGATTCGGCTCTCTACACCGATCCAAGAACTTCCCCCATCGTCAAAGCTTTGGCCTATCAGCCCTCCATTTTCCGTCACCAGTTTGCTGTGGCGATGGCTAAGCTTGGGAACGTTCAAGTTCTTACTGATCTTTTCGAAGGCGAGATTCGAACCAACTGCAGTTGTAGAAATTCTCATTGA 1029 48.88 MKWGVLLVLILASAAVSWADKDLEDNGEEYSSLEVPQLQEFSAFGDFLSYGFYQKSCPGVDGIIHRKLKQWFDKDNSIAAALLRLHFHDCVVRGCDGSILLDYEGSERRAPASKTLRGFEVIDDIKAELEKQCPKTVSCADILTAAAREATVLIGGPYWMVPYGRRDGVDSIAKETELVPLGIEDITSLIELYQSLGLNVLDLVVLSGAHTIGRATCGAIQNRLYNYSATGKPDPSLSPKYLNFLRRKCRWASDYVDLDATTPNTFDNAYYSNLPKKMGLLSTDSALYTDPRTSPIVKALAYQPSIFRHQFAVAMAKLGNVQVLTDLFEGEIRTNCSCRNSH 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4387203 4390080 + CcPI632755_03g004070.1 Cco03g0407 173766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0407 342 FunFam Peroxidase 51 192 - -
Cco03g0407 342 ProSitePatterns Peroxidases active site signature. 79 90 IPR019794 GO:0004601(InterPro)
Cco03g0407 342 ProSitePatterns Peroxidases proximal heme-ligand signature. 202 212 IPR019793 -
Cco03g0407 342 Gene3D - 51 340 - -
Cco03g0407 342 SUPERFAMILY Heme-dependent peroxidases 48 340 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0407 342 ProSiteProfiles Plant heme peroxidase family profile. 47 340 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0407 342 PRINTS Haem peroxidase superfamily signature 259 274 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0407 342 PRINTS Haem peroxidase superfamily signature 155 167 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0407 342 PRINTS Haem peroxidase superfamily signature 79 93 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0407 342 PRINTS Haem peroxidase superfamily signature 137 154 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0407 342 PRINTS Haem peroxidase superfamily signature 202 217 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0407 342 Pfam Peroxidase 66 301 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0407 342 CDD secretory_peroxidase 48 337 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco03g0407 342 PRINTS Plant peroxidase signature 313 326 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0407 342 PRINTS Plant peroxidase signature 136 146 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0407 342 PRINTS Plant peroxidase signature 257 272 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0407 342 PRINTS Plant peroxidase signature 81 101 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0407 342 PRINTS Plant peroxidase signature 155 170 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0407 342 PRINTS Plant peroxidase signature 201 213 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0407 342 PRINTS Plant peroxidase signature 57 76 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0407 342 PRINTS Plant peroxidase signature 117 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0407 342 PRINTS Plant peroxidase signature 273 290 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0407 342 Gene3D Peroxidase, domain 2 180 318 - -
Cco03g0407 342 PANTHER PEROXIDASE 25-RELATED 49 336 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cco03g0407 342 FunFam Peroxidase 180 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0407 Cco-Chr3:4387203 Cco09g0461 Cco-Chr9:4087684 1.80E-66 dispersed
Cco03g0407 Cco-Chr3:4387203 Cco02g2014 Cco-Chr2:33119208 5.50E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0407 K00430 - csv:101208042 639.032