Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco03g0416 | ATGCTTCTTGAATCTTCAAGTTCGAACATGAGCCCTTCCAAATCTTGTCTACGCCCTGTCGGTTGGGTTTGGGTAATGGCTCTGACAGAGGTGAAAACGCTGTATCTGCAATTTCTTCCGCTTTTCATCCTAATTTGGGTATCCAGAATGGGCGTCTCGGACACTATGTTCAACGACTCCGTAAGTGGGCATTCGGTTGTTTCCAGGAATGAAAATCCAAAAGGACGGTGTCCACATGGTTGGTTTATTAGCCCAAACAAGACCAAGTGCTATGGTTTCATGTCGAGTCCAAAATCATGGAATGATTCAGAGACCCAATGTAATGGTTTTGGTGGGAACTTAGCAGCTCTCATAACATGTCAAGAGTTTAGCTTTGCACAAGATCTATGTAATGGAACTCTTGGTGGCTGTTGGGTTGGTGGCAGAGCGCTCAACTCTTCGAATGATTTTGTTTGGAAATGGTCAGATAATGTATCGAAATGGAATGATTCCATTATTCCCAGAACAACTTTGCAATCTAACTGCAAAAATGTCTCTTGCCGCATGAATGATTTGGTTGAAACATGTACTTTAATATTTGGGGGACCAGCAACACCGTTCCTTAGGGATGAGAAATGCAGCAGTTCTCACCCTTTTATATGCATGATAAATCTAGATGATAGATGCCATCGCATGCACTGCCACAAGGAGTATCTAGTTATTCTAGCTGTTGTGAGTGGGTTGATATTTTGCACAACGTTAGCTGTGGTGATTTGGCTTCTTGCCCACAAGAGGAGCAAGAAACGGCGAAGGTCCCGGAAGCCATCCAACCCAGCAGCTTCTGCACTGGTACCCCCCTCGTGGAAGGTGTTTACCAAAGAAGAGCTAAGATCAATAACAAAAAACTTCAGTGAGGGCAACCGTCTTCTTGGAGACACAAAAACGGGTGGTACATACATTGGACTTTTGCCTGATGGTTCAAGAGTTGCAATTAAAAGGTTGAAGAAGTCCAGCTTTCAGAGGAAAAAAGAGTTCCATTCCGAAATTGCAAGAGTTGCTAGACTTCGTCACCCAAATTTGGTTGCCCTGAAAGGATGCTGCTATGACCATGGTGACCGCTACATTGTTTATGAATTCATTGTTAATGGGCCCTTAGATAGATGGCTTCACCATGTACCAAGAGGTGGTCGATGCTTAGATTGGACCATGAGAATGAAAATTGCCACGACTCTTGCCCAAGGGATTGCGTTCCTTCATGACAAGGTCAAGCCACATGTGGTACATCGTGATATCCGTGCGAGTAATGTACTTCTTGATGAAGAATTTGGAGCACATCTGATGGGAGTTGGCCTATCGAAATTGGTAGCATATGAAGTGATGCATGAGAGGACAGTGATGGCAGGGGGAACCTATGGATACCTTGCTCCTGAATTTGTCTACAGAAACGAGCTAACCACAAAAAGTGATGTCTATAGTTTTGGGGTGCTACTGCTTGAAATTGTGACCGGTCGAAGACCTGCACAGGCAGTTGATTCGGTTGGTTGGCAGAGCATTTTCGAATGGGCAACGCCTCTCGTGCAGGCTCACCGTTACCTAGATCTCTTGGATCCTCATATAACAGCCACTTCCACTTCTGAAATTCCAGAGGCTGGTGTTGTTCAGAAAGTCGTGGACCTTGTGTATGCTTGCACACAGCATGTTCCGTCCATGCGCCCTAGAATGTCGCACGTTGTTCATCAGCTGCAACAATTGGCTCCCTCACCTCTCACACATCTCACTATGAAGTAA | 1767 | 45.1 | MLLESSSSNMSPSKSCLRPVGWVWVMALTEVKTLYLQFLPLFILIWVSRMGVSDTMFNDSVSGHSVVSRNENPKGRCPHGWFISPNKTKCYGFMSSPKSWNDSETQCNGFGGNLAALITCQEFSFAQDLCNGTLGGCWVGGRALNSSNDFVWKWSDNVSKWNDSIIPRTTLQSNCKNVSCRMNDLVETCTLIFGGPATPFLRDEKCSSSHPFICMINLDDRCHRMHCHKEYLVILAVVSGLIFCTTLAVVIWLLAHKRSKKRRRSRKPSNPAASALVPPSWKVFTKEELRSITKNFSEGNRLLGDTKTGGTYIGLLPDGSRVAIKRLKKSSFQRKKEFHSEIARVARLRHPNLVALKGCCYDHGDRYIVYEFIVNGPLDRWLHHVPRGGRCLDWTMRMKIATTLAQGIAFLHDKVKPHVVHRDIRASNVLLDEEFGAHLMGVGLSKLVAYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVTGRRPAQAVDSVGWQSIFEWATPLVQAHRYLDLLDPHITATSTSEIPEAGVVQKVVDLVYACTQHVPSMRPRMSHVVHQLQQLAPSPLTHLTMK | 588 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 4460006 | 4463041 | + | CcPI632755_03g004160.1 | Cco03g0416 | 173775 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco03g0416 | 588 | FunFam | C-type lectin receptor-like tyrosine-protein kinase At1g52310 | 373 | 588 | - | - | |
| Cco03g0416 | 588 | FunFam | C-type lectin receptor-like tyrosine-protein kinase | 274 | 372 | - | - | |
| Cco03g0416 | 588 | Gene3D | - | 60 | 218 | IPR016186 | - | |
| Cco03g0416 | 588 | Pfam | Protein tyrosine and serine/threonine kinase | 304 | 574 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Cco03g0416 | 588 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 419 | 431 | IPR008266 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Cco03g0416 | 588 | SMART | tyrkin_6 | 300 | 574 | IPR020635 | GO:0004713(InterPro)|GO:0006468(InterPro) | |
| Cco03g0416 | 588 | Gene3D | Phosphorylase Kinase; domain 1 | 255 | 372 | - | - | |
| Cco03g0416 | 588 | SUPERFAMILY | C-type lectin-like | 77 | 216 | IPR016187 | - | |
| Cco03g0416 | 588 | SUPERFAMILY | Protein kinase-like (PK-like) | 270 | 574 | IPR011009 | - | |
| Cco03g0416 | 588 | Pfam | Lectin C-type domain | 97 | 215 | IPR001304 | - | |
| Cco03g0416 | 588 | PANTHER | OS01G0750732 PROTEIN | 187 | 577 | IPR050885 | - | |
| Cco03g0416 | 588 | ProSiteProfiles | C-type lectin domain profile. | 86 | 215 | IPR001304 | - | |
| Cco03g0416 | 588 | CDD | CLECT | 89 | 214 | - | - | |
| Cco03g0416 | 588 | ProSiteProfiles | Protein kinase domain profile. | 297 | 587 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cco03g0416 | 588 | SMART | CLECT_2 | 77 | 215 | IPR001304 | - | |
| Cco03g0416 | 588 | Gene3D | Transferase(Phosphotransferase) domain 1 | 373 | 583 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco03g0416 | Cco-Chr3:4460006 | Cco05g0170 | Cco-Chr5:1351734 | 1.10E-53 | dispersed | |
| Cco03g0416 | Cco-Chr3:4460006 | Cco07g1324 | Cco-Chr7:27316064 | 6.60E-56 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 86641 | PF07714 | PK_Tyr_Ser-Thr | 1.40E-39 | CL0016 | Cco | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco03g0416 | - | - | - | 0.0 |