Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0423 ATGGCGTCAAGAATCAAAACTGGTGAGGATAGTGACGATAAAGATAGTAGCATCTGGGTTTTGGATCACCAGATGGACCAGCCAATGGAGGAGGAGGCTAGCCGGCTAAGAAATGCGCATCAGGAAAAGGGTCATTCTGTATTTAAAATTCTACAACTTGCATTCCAAAGCCTTGGAATAGTGTACGGAGATTTGGGCACTTCCCCTTTATATGTCTTCTATAACACGTTCCCCGATGGAGTTGAAAATACAGAGGACTTGATAGGAGCTCTGTCATTGATTATATACTCTCTGACTCTCATAACCCTTATCAAGTACGTATTTATAGTCTGCAAGGCAAATGACAATGGTCAAGGTGGAACATTTGCTCTATATTCATTGCTAAGCCGTCATGCTAAAATATTGACTATCCCTAACCATGACCTCAGTGATGAGAAGCTTACAACTTATAGTCGTTCTAAGTATCGGGAACAATCATTTGCTGCAAAAACTAAGAGATGGCTGGAAGGGCATCATTTTAAGAAACATGCAATTCTTGTTCTCGTTCTTGTTGGCTCCTGCATGGTGATTGGGGATGGAATCCTAACACCTGCTATTTCAGTTCTTTCTGCTGTTGGGGGGATCAACGTTGGTCATGCAAAAATAAGCAATGATGTAGCTGTTCTTGTTGCTATTGTCATACTTGTGTTCTTGTTTAGCATGCAACGTTATGGCACAGATAAAGTTGGTTGGCTTTTTGCCCCGGTAGTTTTTCTGTGGTTCACCTTAATAGGAGGCATCGGTATATTTAACATCTGCAAATATGATCACAGTGCCCTGAGAGCCTTTTCTCCAGTATATATATATCGGTACTTCAAACGGGGAGGGAAAGCTGGATGGACATCCCTTGGAGGGATCATGCTTAGTATTACAGGAACTGAAGCACTTTTTGCAGACCTATCCCATTTTCCAGTTTCCTCTATACAAATTGCTTTTACAGTAGTTGTATTTCCTTGCCTTCTTCTAGCCTACACTGGGCAAGTTGCCTATCTCATGAAAAACCCAGATTATGTTATCGGTGCCTTCTACCATTCAATCCCAGAAAGTATCTATTGGCCAGTATTTCTTGTTGCAACTACCGCCGCTATCGTTGCAAGCCAAGCCACCATATCTGCAACCTTTTCATTAGTCAAGCAAGCCCTTGCACTTGGTTGCTTTCCAAGAGTTAAAGTTGTTCATACTTCTACGACTTTCCGTAATCAGATATATATTCCTGATATTAATTGGATCCTGATGATTCTTTGCATTGCCGTGACAGCTGGGTTCAAAAATCAAAGCCAAATTGGAAATGCTTCTGGTACAGCAGTGATTATAGTGATGTTGGTGACCACATTCCTCATGACTTTAATAATGATATTAGTGTGGCACTCCCACTGGTCTCTAGTTCTTCTCTTCACTTGCTTATCACTCCTTGTGGAGGGTTTCTACCTCTCCTCAGTTATTCAGAAGGTTTATCAAGGTGGGTGGGTTCCCTTGGTTATAGCAACAGCATTTTTCATCATCATGTACATTTGGCATTATGGTACAGCTAAACGTTATGAAATTGAGATGCACACTAAGGTTTCGATGGCATGGATTCTTAGCCTTGGCCCCAGTTTAGGACTTGTCAGGGTGCCTGGGATAGGACTTGTGTACACAGAACTAGCAAGTGGAGTCCCCCACATCTTTTCGCACTTCGTCACAAACTTACCCGCCATTCATTCGGTTGTGGTCTTTGTTTGTTTGAAGTGTTTGCCTGTCCACACAGTCCCAGAAGAAGAAAGATTTCTAGTAAAACGGATTGGACCTAAGAATTTTCGCATGTTTCGGTGTGTGGCTAGATATGGTTACAAAGACCTTCACAAGAAAGATGATGATTTTGAGAAGAAACTCTTTGATAGTATCTTCTTGTTTGTTCGACTCGAGTCATTGATGGATGGTGGATCTTCAGATTCGGACGTGTCTAGCCTACTTGAACAACAGGATGAAACAATTACAAAATATGCATTGAACACCATTAATTCAACTTGCTCAACTGTGGAATCAACAGGCCTACGAACAGCAGATTCAATTGAGCTTGCCAATTCTCCATTGCATCAGAACCAAGCCATCATAACACCTAGTCAAGAAAATGGTCAGACTGTGACAGACGAGTTAGAATTCTTGGTTAGCTGTAAAAATGTTGGAGTTGTACACATTCTTGGAAATACAGTAATGAAAGCTAGGAGGGACTCCAGATTATGCAAAAGGATCGCAATTGATTATATATATGCATTTCTTAGGAAGATCTGCAGGGAGAACAGCGTGATGTTCAATGTTCCTCATGAGAGTTTGCTTAATGTTGGCCAAACATTCTATGTATGA 2382 41.31 MASRIKTGEDSDDKDSSIWVLDHQMDQPMEEEASRLRNAHQEKGHSVFKILQLAFQSLGIVYGDLGTSPLYVFYNTFPDGVENTEDLIGALSLIIYSLTLITLIKYVFIVCKANDNGQGGTFALYSLLSRHAKILTIPNHDLSDEKLTTYSRSKYREQSFAAKTKRWLEGHHFKKHAILVLVLVGSCMVIGDGILTPAISVLSAVGGINVGHAKISNDVAVLVAIVILVFLFSMQRYGTDKVGWLFAPVVFLWFTLIGGIGIFNICKYDHSALRAFSPVYIYRYFKRGGKAGWTSLGGIMLSITGTEALFADLSHFPVSSIQIAFTVVVFPCLLLAYTGQVAYLMKNPDYVIGAFYHSIPESIYWPVFLVATTAAIVASQATISATFSLVKQALALGCFPRVKVVHTSTTFRNQIYIPDINWILMILCIAVTAGFKNQSQIGNASGTAVIIVMLVTTFLMTLIMILVWHSHWSLVLLFTCLSLLVEGFYLSSVIQKVYQGGWVPLVIATAFFIIMYIWHYGTAKRYEIEMHTKVSMAWILSLGPSLGLVRVPGIGLVYTELASGVPHIFSHFVTNLPAIHSVVVFVCLKCLPVHTVPEEERFLVKRIGPKNFRMFRCVARYGYKDLHKKDDDFEKKLFDSIFLFVRLESLMDGGSSDSDVSSLLEQQDETITKYALNTINSTCSTVESTGLRTADSIELANSPLHQNQAIITPSQENGQTVTDELEFLVSCKNVGVVHILGNTVMKARRDSRLCKRIAIDYIYAFLRKICRENSVMFNVPHESLLNVGQTFYV 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4537682 4542122 - CcPI632755_03g004230.1 Cco03g0423 173782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0423 793 Pfam K+ potassium transporter C-terminal domain 552 790 IPR053952 -
Cco03g0423 793 NCBIfam potassium uptake protein 53 792 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cco03g0423 793 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 41 792 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cco03g0423 793 Pfam K+ potassium transporter integral membrane domain 53 540 IPR053951 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0423 Cco-Chr3:4537682 Cco05g1438 Cco-Chr5:16234497 1.60E-206 dispersed
Cco03g0423 Cco-Chr3:4537682 Cco03g0425 Cco-Chr3:4547377 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0423 K03549 - csv:101217671 1381.31