Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0425 ATGGGCCTAGCTCTCCTCTGTGCTTTGTTTGTTGGGTGCAAGAGCCATGGATGGGGATGGGGCTGCTTGGATTGCTCTGTTCACTCTGTTCATCGAAGCTTGAAGCTGGGATTCTGGGGCTTTGAATATTTAGTTCTGTGTCTGTTTCTCACTCAATCTTGTCTCTTGGGGCTCTGTTGTTGGGTTTTATTGAGGATTTTCTACCTGGGCTTACTTCATTGGGCGTCTTTTCAAATTGAAACTAAGATGACTTCAAGAGTGGAAATCGATGAGGACTGTGAAATGAGGGGAAGTATGTGGGTTCTAGATCAGAAGCTCGATCAGCCTATGGATGAAGAAGCTGGGAGACTTAGTAATATGTACAAAGAGAAGAAATTCTCAGTATTGTTGCTTCTTCGACTTGCATATCAAAGCCTTGGAGTGGTTTATGGAGATTTGGGGACTTCTCCCCTGTACGTTTTCTACAATACATTTCCTCGTGGGATTTCTGATCCAGAGGATGTAGTTGGAGCACTTTCTTTGATTATATACTCTCTCACTCTCATTCCACTCATAAAGTATGTATTTATCGTGTGTAAAGCAAATGACAATGGTCAAGGTGGAACATTTGCTCTCTACTCCTTGCTGTGTCGTCATGCAAAAGTTAAAACTATTCCAAACCAACATCGAACTGACGAGGAGCTCACAACATATAGCCGTTCTAAATTTCATGAGCAATCATTTGCTGCTAAAACTAAAGGATGGCTTGAAAAGCAATCATCCAGGAAGAATGCATTGCTCATTCTTGTCCTTGTTGGCACTTCCATGGTAGTTGGAGATGGAATTCTCACTCCTGCAATATCGGTTTTATCCGCTGCGGGAGGGATCAAAGTAAACCACCCCCATGTGAGCAGTGATGTAGTTGTGCTTGTTGCTGTTGTAATACTAGTAGGATTATTCAGCTTGCAACGCTATGGTACTGATAGAGTTGGTTGGCTCTTTGCTCCAGTTGTGCTACTATGGTTTCTATTAATTGGAGGTATAGGCATGTTCAACATCTGGAAATATGATAAAACCATTCTAAGAGCCTTTTCACCTGTGTATATTTTTCGCTATTTTAGAAGGCGAGGGATGGATGGTTGGACCTCCCTCGGAGGTGTACTGCTGAGTATAACAGGCACAGAGGCTCTATTTGCCGATCTGGCTCATTTTCGTGTAGCAGCTGTACAGATTGCTTTTACAGTAGTTGTTTTTCCTTGCCTTCTCTTGGCCTATTCTGGACAGGCTGCCTACCTTATTAACAATACGGACCATGTAGTTGATGCCTTCTATCGTTCAATCCCAGAAACCATATACTGGCCCGTGTTTGTTGTTGCAACTGCTGCTGCTGTAGTTGCTAGTCAAGCCACTATATCTGCAACATTTTCAATAATCAAGCAGGCTCTTGCTCATGGCTGCTTTCCAAGAGTTAAAGTTGTTCATACCTCAAAGAATTTCCTTGGTCAGATTTATGTTCCAGATATTAACTGGATCCTCATGATTCTTTGTATTGCTGTGACCGCAGGATTTAAGAATCAAAGTCAAATTGGAAATGCTTATGGGACAGCGGTTGTGGTAGTCATGCTTGTGACCACACTGCTCATGATTCTAATCATGATCTTGGTGTGGCGCTGTCATTGGATCATTGCCATGATTTTCACTGGACTGTCGCTTGTCGTGGAGTGCAGTTACTTTTCTGCTGTTCTCTTCAAGGTTGATCAAGGTGGCTGGGTCCCCCTTGTGATTGCTGGAGCTTTTCTTGTCATCATGTATGTGTGGCATTATGGTACTGTTAAACGATACGAATTCGAGCTGCACAGTAAAGTCTCAATGGCATGGGTTCTTGGGCTTGGTCCCAGTCTGGGACTAGTCCGTGTTCCTGGAATTGGACTTGTGTATACTGAGCTAGCAAGCGGCGTACCTCACATATTTTCCCATTTCATTACGAATCTGCCTGCCATCCATTCTGTTGTTGTGTTTGTCTGCGTGAAATATCTTCCAGTCTACACAGTGCCAGAGGAAGAAAGGTTCCTGGTAAAGCGGATAGGACCAAAGAATTTCCACATGTTTCGTTGTGTTGCAAGATACGGTTATAAAGACCTCCATAAAAAGGATGACGATTTTGAGAAAAAGCTTTTTGATAGCATCTTCCTCTTTGTCAGGCTTGAATCCATGATGGAAGGTTGTTCGGACTCTGATGAGTACAGTTTGTATGGCCAGCAAACTGAGCATTCTAGGGATGGCCTGTTGATTGGCAACCATGGAAATGCAGCTTCACCCAATGTGGACACAACATTCTCATCGGTTGACTCAATCGTGCCAGTTAGATCTCCGATGCATATGAATAGCACGGTAAGATCATCTGAGCAAGCAAGCAACCATACGGATAGCGATGAGATTGAATTCTTGATGAGGTGTAGAGATGCTGGGGTGGTGCACATACTGGGAAACACTGTAATTAGAGCAAGAAGGGAATCAAAATTCTACAAGAAGATAGCTGTTGATTACATATATGCCTTTCTTAGAAAGATTTGCAGGGAGAATAGTGTGATTTTCAATGTTCCTCATGAGAGTCTATTAAACGTTGGCCAAATTTTCTATGTATAG 2625 42.9 MGLALLCALFVGCKSHGWGWGCLDCSVHSVHRSLKLGFWGFEYLVLCLFLTQSCLLGLCCWVLLRIFYLGLLHWASFQIETKMTSRVEIDEDCEMRGSMWVLDQKLDQPMDEEAGRLSNMYKEKKFSVLLLLRLAYQSLGVVYGDLGTSPLYVFYNTFPRGISDPEDVVGALSLIIYSLTLIPLIKYVFIVCKANDNGQGGTFALYSLLCRHAKVKTIPNQHRTDEELTTYSRSKFHEQSFAAKTKGWLEKQSSRKNALLILVLVGTSMVVGDGILTPAISVLSAAGGIKVNHPHVSSDVVVLVAVVILVGLFSLQRYGTDRVGWLFAPVVLLWFLLIGGIGMFNIWKYDKTILRAFSPVYIFRYFRRRGMDGWTSLGGVLLSITGTEALFADLAHFRVAAVQIAFTVVVFPCLLLAYSGQAAYLINNTDHVVDAFYRSIPETIYWPVFVVATAAAVVASQATISATFSIIKQALAHGCFPRVKVVHTSKNFLGQIYVPDINWILMILCIAVTAGFKNQSQIGNAYGTAVVVVMLVTTLLMILIMILVWRCHWIIAMIFTGLSLVVECSYFSAVLFKVDQGGWVPLVIAGAFLVIMYVWHYGTVKRYEFELHSKVSMAWVLGLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAIHSVVVFVCVKYLPVYTVPEEERFLVKRIGPKNFHMFRCVARYGYKDLHKKDDDFEKKLFDSIFLFVRLESMMEGCSDSDEYSLYGQQTEHSRDGLLIGNHGNAASPNVDTTFSSVDSIVPVRSPMHMNSTVRSSEQASNHTDSDEIEFLMRCRDAGVVHILGNTVIRARRESKFYKKIAVDYIYAFLRKICRENSVIFNVPHESLLNVGQIFYV 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4547377 4554724 - CcPI632755_03g004250.1 Cco03g0425 173784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0425 874 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 127 873 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cco03g0425 874 Pfam K+ potassium transporter C-terminal domain 633 871 IPR053952 -
Cco03g0425 874 Pfam K+ potassium transporter integral membrane domain 134 619 IPR053951 -
Cco03g0425 874 NCBIfam potassium uptake protein 134 873 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0425 Cco-Chr3:4547377 Cco05g1438 Cco-Chr5:16234497 6.90E-211 dispersed
Cco03g0423 Cco-Chr3:4537682 Cco03g0425 Cco-Chr3:4547377 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0425 K03549 - csv:101217915 1478.77