Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0446 ATGGCCTCAAAATTCTCCCACCTTCTACTAATTCTTCTCTTCATTCTCTCATTCATCAATTCCTCACTCCAAGATTACTACACTCCCAACAAGAAAAATATGAACATAATCGACTCTTGCTGGCGAAAAACCTCCAATTGGGCCAAAAACCGCCAAGCCTTAGCCGATTGCGCCGTTGGCTACGGCAAGGACGCAATCGGAGGCAAATTTGGCACCATTTACGTCGTCACTGACCCTTCCGACAACCCTTCAAACCCGAAATACGGAACGTTACGTTACGGCGTGATCCAAAACAAGCCATTGTGGATTGTGTTTGGTAAGGACATGGTTATTGTGTTGAAGAATGAGCTGATGGTAAATAGTTACAAGACCATTGATGGGCGTGGAGCTAAAGTGGAAATTGCTTATGGGCCTTGTATTACGGTTCAAAGGGTTAGCCATGTAATTATACATGGAATTAGTATTCATGATTGTAAGCCTGGCAAAGCTGGGCTTGTTAGAGACAGTGTTTCGCATGTTGGGAAGCGACAAGGGTCTGATGGTGATGCTATTTCTGTGTTCGGTTCTTCCCATGTTTGGATTGATCATTGTTTCTTAGCTCGATGTACTGATGGTCTTGTTGATGTTATTCATGCTTCCACTGCTGTTACTATCTCAAATAACTACTTCTCCCAACATGATAAGGTGATGTTACTTGGACATAATGATGGGTTCACTGAAGATAAAATTATGAGAGTCACCATTGTTTTCAACCGCTTCGGTGCTGGCCTTATCGAGAGGATGCCAAGGGTTAGGTTTGGTTATGCCCATGTAGCGAACAATAGATACGACGAGTGGAAAATGTATGCCATCGGTGGAAGTGCAAACCCCACAATCTTCAGTGAAGGAAACTACTTTGTAGCTCCCCGAAATTCTTATGCCAAGCAGGTTACAAAGAGGGAGGTTAATAATGGGTGGAAGAACTGGAAATGGAGATCCTCCAGAGATGTGTTCTTAAATGGTGCTTATTTTGTGCCATCAGGATGGGGAAGCTGCACCCCAATTTACACAAAAGCTCAGTCTTTTCCAGTGGCTCCTGGCTCTATGGTTCCAGCTTTGACTGAAAATGCAGGCCCACTTCCTTGTTTTATCGGCAAACCTTGCTAA 1146 43.89 MASKFSHLLLILLFILSFINSSLQDYYTPNKKNMNIIDSCWRKTSNWAKNRQALADCAVGYGKDAIGGKFGTIYVVTDPSDNPSNPKYGTLRYGVIQNKPLWIVFGKDMVIVLKNELMVNSYKTIDGRGAKVEIAYGPCITVQRVSHVIIHGISIHDCKPGKAGLVRDSVSHVGKRQGSDGDAISVFGSSHVWIDHCFLARCTDGLVDVIHASTAVTISNNYFSQHDKVMLLGHNDGFTEDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFVAPRNSYAKQVTKREVNNGWKNWKWRSSRDVFLNGAYFVPSGWGSCTPIYTKAQSFPVAPGSMVPALTENAGPLPCFIGKPC 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4778487 4780488 + CcPI632755_03g004460.1 Cco03g0446 173805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0446 381 SUPERFAMILY Pectin lyase-like 34 372 IPR011050 -
Cco03g0446 381 PRINTS Pollen allergen Amb family signature 116 132 IPR018082 -
Cco03g0446 381 PRINTS Pollen allergen Amb family signature 80 105 IPR018082 -
Cco03g0446 381 PRINTS Pollen allergen Amb family signature 322 346 IPR018082 -
Cco03g0446 381 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Cco03g0446 381 PRINTS Pollen allergen Amb family signature 260 279 IPR018082 -
Cco03g0446 381 PRINTS Pollen allergen Amb family signature 180 201 IPR018082 -
Cco03g0446 381 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Cco03g0446 381 PRINTS Pollen allergen Amb family signature 352 375 IPR018082 -
Cco03g0446 381 PANTHER PECTATE LYASE 18-RELATED 12 376 IPR045032 GO:0030570(InterPro)
Cco03g0446 381 SMART amb_all 108 305 IPR002022 -
Cco03g0446 381 Pfam Pectate lyase 114 299 IPR002022 -
Cco03g0446 381 Gene3D - 34 374 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1844 Cco-Chr1:31004490 Cco03g0446 Cco-Chr3:4778487 8.60E-89 dispersed
Cco03g0446 Cco-Chr3:4778487 Cco09g2155 Cco-Chr9:35942371 2.60E-122 dispersed
Cco03g0446 Cco-Chr3:4778487 Cco04g1960 Cco-Chr4:33887630 2.50E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0446 K01728 - csv:101211379 738.413