Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0446 | ATGGCCTCAAAATTCTCCCACCTTCTACTAATTCTTCTCTTCATTCTCTCATTCATCAATTCCTCACTCCAAGATTACTACACTCCCAACAAGAAAAATATGAACATAATCGACTCTTGCTGGCGAAAAACCTCCAATTGGGCCAAAAACCGCCAAGCCTTAGCCGATTGCGCCGTTGGCTACGGCAAGGACGCAATCGGAGGCAAATTTGGCACCATTTACGTCGTCACTGACCCTTCCGACAACCCTTCAAACCCGAAATACGGAACGTTACGTTACGGCGTGATCCAAAACAAGCCATTGTGGATTGTGTTTGGTAAGGACATGGTTATTGTGTTGAAGAATGAGCTGATGGTAAATAGTTACAAGACCATTGATGGGCGTGGAGCTAAAGTGGAAATTGCTTATGGGCCTTGTATTACGGTTCAAAGGGTTAGCCATGTAATTATACATGGAATTAGTATTCATGATTGTAAGCCTGGCAAAGCTGGGCTTGTTAGAGACAGTGTTTCGCATGTTGGGAAGCGACAAGGGTCTGATGGTGATGCTATTTCTGTGTTCGGTTCTTCCCATGTTTGGATTGATCATTGTTTCTTAGCTCGATGTACTGATGGTCTTGTTGATGTTATTCATGCTTCCACTGCTGTTACTATCTCAAATAACTACTTCTCCCAACATGATAAGGTGATGTTACTTGGACATAATGATGGGTTCACTGAAGATAAAATTATGAGAGTCACCATTGTTTTCAACCGCTTCGGTGCTGGCCTTATCGAGAGGATGCCAAGGGTTAGGTTTGGTTATGCCCATGTAGCGAACAATAGATACGACGAGTGGAAAATGTATGCCATCGGTGGAAGTGCAAACCCCACAATCTTCAGTGAAGGAAACTACTTTGTAGCTCCCCGAAATTCTTATGCCAAGCAGGTTACAAAGAGGGAGGTTAATAATGGGTGGAAGAACTGGAAATGGAGATCCTCCAGAGATGTGTTCTTAAATGGTGCTTATTTTGTGCCATCAGGATGGGGAAGCTGCACCCCAATTTACACAAAAGCTCAGTCTTTTCCAGTGGCTCCTGGCTCTATGGTTCCAGCTTTGACTGAAAATGCAGGCCCACTTCCTTGTTTTATCGGCAAACCTTGCTAA | 1146 | 43.89 | MASKFSHLLLILLFILSFINSSLQDYYTPNKKNMNIIDSCWRKTSNWAKNRQALADCAVGYGKDAIGGKFGTIYVVTDPSDNPSNPKYGTLRYGVIQNKPLWIVFGKDMVIVLKNELMVNSYKTIDGRGAKVEIAYGPCITVQRVSHVIIHGISIHDCKPGKAGLVRDSVSHVGKRQGSDGDAISVFGSSHVWIDHCFLARCTDGLVDVIHASTAVTISNNYFSQHDKVMLLGHNDGFTEDKIMRVTIVFNRFGAGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSANPTIFSEGNYFVAPRNSYAKQVTKREVNNGWKNWKWRSSRDVFLNGAYFVPSGWGSCTPIYTKAQSFPVAPGSMVPALTENAGPLPCFIGKPC | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4778487 | 4780488 | + | CcPI632755_03g004460.1 | Cco03g0446 | 173805 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0446 | 381 | SUPERFAMILY | Pectin lyase-like | 34 | 372 | IPR011050 | - | |
Cco03g0446 | 381 | PRINTS | Pollen allergen Amb family signature | 116 | 132 | IPR018082 | - | |
Cco03g0446 | 381 | PRINTS | Pollen allergen Amb family signature | 80 | 105 | IPR018082 | - | |
Cco03g0446 | 381 | PRINTS | Pollen allergen Amb family signature | 322 | 346 | IPR018082 | - | |
Cco03g0446 | 381 | PRINTS | Pollen allergen Amb family signature | 282 | 301 | IPR018082 | - | |
Cco03g0446 | 381 | PRINTS | Pollen allergen Amb family signature | 260 | 279 | IPR018082 | - | |
Cco03g0446 | 381 | PRINTS | Pollen allergen Amb family signature | 180 | 201 | IPR018082 | - | |
Cco03g0446 | 381 | PRINTS | Pollen allergen Amb family signature | 57 | 74 | IPR018082 | - | |
Cco03g0446 | 381 | PRINTS | Pollen allergen Amb family signature | 352 | 375 | IPR018082 | - | |
Cco03g0446 | 381 | PANTHER | PECTATE LYASE 18-RELATED | 12 | 376 | IPR045032 | GO:0030570(InterPro) | |
Cco03g0446 | 381 | SMART | amb_all | 108 | 305 | IPR002022 | - | |
Cco03g0446 | 381 | Pfam | Pectate lyase | 114 | 299 | IPR002022 | - | |
Cco03g0446 | 381 | Gene3D | - | 34 | 374 | IPR012334 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1844 | Cco-Chr1:31004490 | Cco03g0446 | Cco-Chr3:4778487 | 8.60E-89 | dispersed | |
Cco03g0446 | Cco-Chr3:4778487 | Cco09g2155 | Cco-Chr9:35942371 | 2.60E-122 | dispersed | |
Cco03g0446 | Cco-Chr3:4778487 | Cco04g1960 | Cco-Chr4:33887630 | 2.50E-165 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0446 | K01728 | - | csv:101211379 | 738.413 |