Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0463 | ATGTCTTGTTCAAATCTGACTATGTGGGTGTCTTCAAAACCCACGGTTTCTGATGCATCCTCCCTTTCTTTCCGCTCATTTTTGAGCCCTTTTCAGCTTCCTTCCCAGAATTCGAGCTCAACTTACCCTGGCCGATCATGCTCAGTTTCTCCAATCCACTGTGGTCTTCGGGAGCTTCGAGACCGTATCGATTCGGTGAAGAACACCCAGAAGATCACTGAAGCTATGAAGCTTGTTGCTGCTGCCAAAGTCCGCAGAGCTCAAGAAGCTGTTGTAAATGGAAGACCCTTCTCAGAAGCTTTGGTTGAGGTTCTTTACAACATCAATGAGCAACTTCAAACAGAAGATGTCGATGTTCCGTTAACCAAAGTAAGACCTGTTAAGAAAGTTGCATTAGTTGTTGTCACTGGTGACCGAGGTCTTTGCGGTGGTTTCAACAACAATATCATTAAGAAAGCTGAAGCTAGAATATCGGAATTGAAGGCACTTGGTCTTGATTACACTGTCATTAGTGTTGGTAAGAAGGGTAATTCCTATTTCCTTCGCCGGCCTTACATTCCAGTTGATAAGTTCCTTGAAGGTGGCACTCTTCCCACAGCTAAAGAAGCTCAAGCAATAGCTGATGATGTTTTCTCACTCTTTGTTAGTGAGGAAGTTGATAAAGTAGAGCTTTTGTACACCAAATTTGTGTCTTTGGTAAAATCTGATCCTGTTATTCACACTCTTCTTCCTCTCTCACCCAAGGGTGAGATCTGTGATATAAATGGAGTCTGTGTAGATGCTGCAGAAGATGAGTTTTTCAGGTTGACAACAAAGGAAGGGAAATTGACAGTTGAAAGGGATTCAGTGAGGACAAGCACATCAGATTTCTCCCCAATTTTGGAGTTTGAGCAAGACCCAGTTCAGATCTTGGATGCTTTATTGCCTCTGTATTTGAACAGCCAGATTTTGAGGGCATTGCAAGAGTCACTGGCCAGTGAACTTGCAGCTAGAATGAGTGCTATGAGTAATGCAACTGATAATGCTTCTGAGCTGAAGAGAACTCTGTCTATTGTTTACAATAGACAGCGCCAAGCTAAGATTACTGGAGAAATCTTGGAGATTGTTGCTGGTGCTAATGCCTTGACTTAA | 1131 | 42.88 | MSCSNLTMWVSSKPTVSDASSLSFRSFLSPFQLPSQNSSSTYPGRSCSVSPIHCGLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNNIIKKAEARISELKALGLDYTVISVGKKGNSYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDSVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNASELKRTLSIVYNRQRQAKITGEILEIVAGANALT | 376 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4915595 | 4916725 | - | CcPI632755_03g004630.1 | Cco03g0463 | 173822 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0463 | 376 | PANTHER | ATP SYNTHASE GAMMA CHAIN | 1 | 375 | IPR000131 | GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER) | |
Cco03g0463 | 376 | Pfam | ATP synthase | 56 | 375 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Cco03g0463 | 376 | FunFam | ATP synthase gamma chain, chloroplastic | 123 | 246 | - | - | |
Cco03g0463 | 376 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 272 | 375 | - | - | |
Cco03g0463 | 376 | ProSitePatterns | ATP synthase gamma subunit signature. | 361 | 374 | IPR023632 | - | |
Cco03g0463 | 376 | Hamap | ATP synthase gamma chain [atpG]. | 53 | 375 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Cco03g0463 | 376 | FunFam | ATP synthase gamma chain, chloroplastic | 272 | 375 | - | - | |
Cco03g0463 | 376 | SUPERFAMILY | ATP synthase (F1-ATPase), gamma subunit | 55 | 375 | IPR035968 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Cco03g0463 | 376 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 55 | 122 | - | - | |
Cco03g0463 | 376 | Gene3D | - | 123 | 246 | - | - | |
Cco03g0463 | 376 | PRINTS | ATP synthase gamma subunit signature | 127 | 146 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Cco03g0463 | 376 | PRINTS | ATP synthase gamma subunit signature | 322 | 341 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Cco03g0463 | 376 | PRINTS | ATP synthase gamma subunit signature | 353 | 374 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Cco03g0463 | 376 | PRINTS | ATP synthase gamma subunit signature | 220 | 237 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Cco03g0463 | 376 | CDD | F1-ATPase_gamma | 56 | 372 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Cco03g0463 | 376 | NCBIfam | ATP synthase F1 subunit gamma | 55 | 375 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
Cco03g0463 | 376 | FunFam | ATP synthase gamma chain, chloroplastic | 54 | 121 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1771 | Cco-Chr1:30420665 | Cco03g0463 | Cco-Chr3:4915595 | 1.80E-18 | dispersed | |
Cco03g0463 | Cco-Chr3:4915595 | Cco10g0501 | Cco-Chr10:6012963 | 2.20E-105 | dispersed | |
Cco03g0463 | Cco-Chr3:4915595 | Cco04g1981 | Cco-Chr4:34023254 | 3.60E-172 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0463 | K02115 | - | csv:101214408 | 670.618 |