Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0463 ATGTCTTGTTCAAATCTGACTATGTGGGTGTCTTCAAAACCCACGGTTTCTGATGCATCCTCCCTTTCTTTCCGCTCATTTTTGAGCCCTTTTCAGCTTCCTTCCCAGAATTCGAGCTCAACTTACCCTGGCCGATCATGCTCAGTTTCTCCAATCCACTGTGGTCTTCGGGAGCTTCGAGACCGTATCGATTCGGTGAAGAACACCCAGAAGATCACTGAAGCTATGAAGCTTGTTGCTGCTGCCAAAGTCCGCAGAGCTCAAGAAGCTGTTGTAAATGGAAGACCCTTCTCAGAAGCTTTGGTTGAGGTTCTTTACAACATCAATGAGCAACTTCAAACAGAAGATGTCGATGTTCCGTTAACCAAAGTAAGACCTGTTAAGAAAGTTGCATTAGTTGTTGTCACTGGTGACCGAGGTCTTTGCGGTGGTTTCAACAACAATATCATTAAGAAAGCTGAAGCTAGAATATCGGAATTGAAGGCACTTGGTCTTGATTACACTGTCATTAGTGTTGGTAAGAAGGGTAATTCCTATTTCCTTCGCCGGCCTTACATTCCAGTTGATAAGTTCCTTGAAGGTGGCACTCTTCCCACAGCTAAAGAAGCTCAAGCAATAGCTGATGATGTTTTCTCACTCTTTGTTAGTGAGGAAGTTGATAAAGTAGAGCTTTTGTACACCAAATTTGTGTCTTTGGTAAAATCTGATCCTGTTATTCACACTCTTCTTCCTCTCTCACCCAAGGGTGAGATCTGTGATATAAATGGAGTCTGTGTAGATGCTGCAGAAGATGAGTTTTTCAGGTTGACAACAAAGGAAGGGAAATTGACAGTTGAAAGGGATTCAGTGAGGACAAGCACATCAGATTTCTCCCCAATTTTGGAGTTTGAGCAAGACCCAGTTCAGATCTTGGATGCTTTATTGCCTCTGTATTTGAACAGCCAGATTTTGAGGGCATTGCAAGAGTCACTGGCCAGTGAACTTGCAGCTAGAATGAGTGCTATGAGTAATGCAACTGATAATGCTTCTGAGCTGAAGAGAACTCTGTCTATTGTTTACAATAGACAGCGCCAAGCTAAGATTACTGGAGAAATCTTGGAGATTGTTGCTGGTGCTAATGCCTTGACTTAA 1131 42.88 MSCSNLTMWVSSKPTVSDASSLSFRSFLSPFQLPSQNSSSTYPGRSCSVSPIHCGLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNNIIKKAEARISELKALGLDYTVISVGKKGNSYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIHTLLPLSPKGEICDINGVCVDAAEDEFFRLTTKEGKLTVERDSVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNATDNASELKRTLSIVYNRQRQAKITGEILEIVAGANALT 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4915595 4916725 - CcPI632755_03g004630.1 Cco03g0463 173822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0463 376 PANTHER ATP SYNTHASE GAMMA CHAIN 1 375 IPR000131 GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER)
Cco03g0463 376 Pfam ATP synthase 56 375 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco03g0463 376 FunFam ATP synthase gamma chain, chloroplastic 123 246 - -
Cco03g0463 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 272 375 - -
Cco03g0463 376 ProSitePatterns ATP synthase gamma subunit signature. 361 374 IPR023632 -
Cco03g0463 376 Hamap ATP synthase gamma chain [atpG]. 53 375 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco03g0463 376 FunFam ATP synthase gamma chain, chloroplastic 272 375 - -
Cco03g0463 376 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 55 375 IPR035968 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco03g0463 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 55 122 - -
Cco03g0463 376 Gene3D - 123 246 - -
Cco03g0463 376 PRINTS ATP synthase gamma subunit signature 127 146 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco03g0463 376 PRINTS ATP synthase gamma subunit signature 322 341 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco03g0463 376 PRINTS ATP synthase gamma subunit signature 353 374 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco03g0463 376 PRINTS ATP synthase gamma subunit signature 220 237 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco03g0463 376 CDD F1-ATPase_gamma 56 372 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco03g0463 376 NCBIfam ATP synthase F1 subunit gamma 55 375 IPR000131 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Cco03g0463 376 FunFam ATP synthase gamma chain, chloroplastic 54 121 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1771 Cco-Chr1:30420665 Cco03g0463 Cco-Chr3:4915595 1.80E-18 dispersed
Cco03g0463 Cco-Chr3:4915595 Cco10g0501 Cco-Chr10:6012963 2.20E-105 dispersed
Cco03g0463 Cco-Chr3:4915595 Cco04g1981 Cco-Chr4:34023254 3.60E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0463 K02115 - csv:101214408 670.618