Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0467 ATGGGTTCCAAAACACTATTTTTCTTCATCTTCCTTTCCTGTTTGGTCGCTTCTTTCAGGTATGCTTCTGCACAGGATGAGGAAGACAATGGCCTTGTTATGAATTTTTACAAAGATACATGTCCCCAAGCCGAAGATATCATCAAAGAACAAGTTAGGCTTCTCTACAAGCGCCACAAGAACACTGCATTCTCTTGGCTCAGAAACATCTTCCATGACTGTGCTGTTCAATCCTGTGATGCATCTCTGCTGCTGGATTCAACAAGAAGGACCCTGTCTGAGAAGGAAACAGACAGAAGCTTTGGACTCAGGAATTTCAGGTATATTGAGACCATTAAAGAGGCAGTGGAAAGGGAATGCCCTGGAGTTGTGTCCTGTGCTGATATCCTTGTTTTGTCTGCAAGAGATGGTATTGTTTCTCTTGGGGGGCCTTACATCCCACTTAAAACAGGCAGAAGAGATGGAAGGAAAAGCAGAGCTGATATTTTGGAAGAGTATCTTCCAGACCACAATGAAAGCATGTCTGTTGTCCTTGAAAGATTTGCAGCCATGGGTATTGACGCCCCTGGAGTGGTTGCTTTACTAGGAGCTCATAGTGTTGGTAGAACACACTGTGTGAAGCTGGTGCACCGACTCTACCCACAAGTAGACCCTGTGCTGAACCCTGCCCATGTAGAGCACATGTTGTACAAGTGTCCTGATGAGATCCCAGATCCCAAGGCTGTACAATACGTGAGGAACGACCGTGGTACACCCATGATTCTGGACAACAATTACTACAGAAACATACTTGACAACAAAGGGTTGCTGATAGTGGATCACCAACTAGCTACAGACAAGAGAACAAAGCCATATGTGAAGAAGATGGCCAAAAAGCAAGACTATTTCTTCAAGGAATTCTCAAGAGCCATTACCATACTTTCTGAGAACAACCCTCTCACTGGCACAAAGGGTGAGATCAGGAAGCAGTGCAATGTTGCCAACAAGCTGCACTGA 996 44.98 MGSKTLFFFIFLSCLVASFRYASAQDEEDNGLVMNFYKDTCPQAEDIIKEQVRLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRRTLSEKETDRSFGLRNFRYIETIKEAVERECPGVVSCADILVLSARDGIVSLGGPYIPLKTGRRDGRKSRADILEEYLPDHNESMSVVLERFAAMGIDAPGVVALLGAHSVGRTHCVKLVHRLYPQVDPVLNPAHVEHMLYKCPDEIPDPKAVQYVRNDRGTPMILDNNYYRNILDNKGLLIVDHQLATDKRTKPYVKKMAKKQDYFFKEFSRAITILSENNPLTGTKGEIRKQCNVANKLH 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4941868 4943327 + CcPI632755_03g004670.1 Cco03g0467 173826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0467 331 Gene3D - 35 328 - -
Cco03g0467 331 FunFam Peroxidase 168 307 - -
Cco03g0467 331 SUPERFAMILY Heme-dependent peroxidases 32 328 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0467 331 Pfam Peroxidase 49 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0467 331 Gene3D Peroxidase, domain 2 168 307 - -
Cco03g0467 331 PRINTS Haem peroxidase superfamily signature 63 77 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0467 331 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0467 331 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0467 331 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0467 331 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0467 331 CDD secretory_peroxidase 31 326 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco03g0467 331 ProSiteProfiles Plant heme peroxidase family profile. 31 328 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0467 331 PRINTS Plant peroxidase signature 41 60 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0467 331 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0467 331 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0467 331 PRINTS Plant peroxidase signature 65 85 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0467 331 PRINTS Plant peroxidase signature 104 117 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0467 331 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0467 331 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0467 331 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0467 331 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0467 331 PANTHER - 17 327 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0467 331 FunFam Peroxidase 35 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0467 Cco-Chr3:4941868 Cco04g1088 Cco-Chr4:26329248 1.20E-102 dispersed
Cco03g0467 Cco-Chr3:4941868 Cco10g2033 Cco-Chr10:33747393 8.10E-104 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0467 K00430 - csv:101214168 639.802