Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0485 ATGTTTGGAGCACATGGTTTTGAAGATCATCATGAGGATCTACTACTGGAGATGACCCAGAAAAATTTTGAATGTGAACTGGAAAAATTTGGAGAAGATGAGTTCGAGAGTAGATCGGTGAACGACGCCATGGAAGCTCCTTTGGGAGAGGAACTTTGTGTTCTGAATCAGAGAAATAAGAGGAAGCGTTACCATCGCCATACTCAGCTTCAAATACAGGAAATGGAAGCGTTTTTTAAGGAGTGTCCACATCCGGATGACAAGCAAAGAAAGCAGCTGAGCCGTGAGTTAGGACTCGAACCCCTCCAGGTCAAGTTCTGGTTCCAAAACAAGCGCACACAAATCAAGGCTCAACAAGAACGGCATGAGAATGCAATATTGAAAGCTCAAAACGAGAAATTAAAAGCAGAGAACATGAGGTACAAAGAAGCTCTAAGCAATACAAGTTGCCCCAATTGTGGAGGTCCTGCTGCTCTTGGTGAAATGTCCTTTGATGCCCAACATTTGAGAATTGACAATGCACATCTAAGAGACGAGATAGAGAGATTAAACAGTAGTAGCAAATATAGTGGGAAGGCATGGGGTTCTCATTCTCATATGGTTCCATGTGGAGGGCAGCTTGATCATCTTGGGGTTGGAAGATCATCATTAAAGCCCCAACAAGCTGATCATTTGTTAGGGGAAATGTATGGAGGAGTGGGAGAGACAATGTTAAAAAAGTCTGTGACTACTGAAATTGATAAGCCAGTAATTGTTGAGCTTGCTGTTTCAGCCATGGAAGAAGTTTGTAGAATGGCTCAAGCAGGTGAGCCGTTGTGGGTTACTGGTGAAAACTCCATGGAAATGCTGAATGAAGATGAGTACTTGAGGACTTACTCTACACGAATTGGCCCTAGAATTGTGGGGCTTAGCTTTGAAGCTTCAAGGCAAACCTCCATTCTTGCTTTCAATCATTTAAAACTTGTCCATGTTCTCATGGACGTGAATCAATGGTCAACCATATTTTGTGGGATTGTTTCAAGAGCATTGACACTTGAAGTCTTATCAACCGGAGTTGTTGGCGACTATAATGGAGCTCTGCATGTCATGACGGCCGAGTTTCAAGTTCCTTCTCCCCTGGTTCCGACTCGAGAAAATTACTTCGTGAGATACTGCAAGCAGCAGGCAGACCGGAGTTGGGCGGTGGTCGATGTCTCGCTTGATTATTTACGCCCCACACCTACTTCAAGGACTCGAAGAAGACCATCCGGTTGCTTAATCCAAGAACTACCAAATGGTTGCTCAAAGGTGACTTGGGTGGAACATGTAGAAGTGGATGATCGAGCAGTACACAATTTGTACAAACGAGTGGTCTCATGTGGGCTTGCCTTTGGCGCAAAACGATGGATGGCTACTCTTGATCGACAGTGCCAACGCTTAACCAACTCCTCCTCTACCAACATTGCTGCACTAGACATTTGCGTGGTAACAGGGCAAGAGGGGAGGAAGAGCGTAATGAAGTTAGCAGAGAGAATGGTAAGGAGCTTCTGCAGTGGCGTTGGGGCTGCTACTGCACACAACTGGACTACATTATCCACCATTGATTCCGACGATGTTCGGGTCATGGCGAGAAAGAGCCTCGACGACCCTGGCCGACCTCCTGGAATTGTTCTCAATGCAGCAACTTCTTTCTGGATTCCAATTCCCCCTAACAGAGTCTTCCATTTCCTCCGAGATCAAAACACCCGCAATCAGTGGGATATACTTTCAAACGGTGGATTAGTCCAAGAAATGGCTCGCATTGGCAACGATCGAAACCCAGGAAACTGTGTCTCATTACTTCGTGTTAACAGTGCAAATTCAAGTCAGAGCAACATGTTAATACTACAAGAGAGCTGCAGCGACGACATCAGCGGTTCCTACATAATCTACGCCCCAGTGGACACCGTCGCCATGAACATGGTCTTGAGCGGCGGAGACCCTGATTACGTGGCTCTCTTGCCATCCGGATTCGCCATTCTCCCTGATGGGCCGCCCATTGGGGCTGATGGGCCTTCAGGAATTCTCGAATTCGGGTCCGGTGGTTCCTTGTTGACCGTTGCTTTTCAGATATTAGTGGATTCAGCTCCAACTGCCAAATTGTCTCTTGGGTCCGTGGCTACGGTTAACAGCCTCATCAAGTGCACGGTGGAGCGGATTAGAGCTGCACTCATGTGTGACCAACCCATGAATTAA 2214 46.61 MFGAHGFEDHHEDLLLEMTQKNFECELEKFGEDEFESRSVNDAMEAPLGEELCVLNQRNKRKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQIKAQQERHENAILKAQNEKLKAENMRYKEALSNTSCPNCGGPAALGEMSFDAQHLRIDNAHLRDEIERLNSSSKYSGKAWGSHSHMVPCGGQLDHLGVGRSSLKPQQADHLLGEMYGGVGETMLKKSVTTEIDKPVIVELAVSAMEEVCRMAQAGEPLWVTGENSMEMLNEDEYLRTYSTRIGPRIVGLSFEASRQTSILAFNHLKLVHVLMDVNQWSTIFCGIVSRALTLEVLSTGVVGDYNGALHVMTAEFQVPSPLVPTRENYFVRYCKQQADRSWAVVDVSLDYLRPTPTSRTRRRPSGCLIQELPNGCSKVTWVEHVEVDDRAVHNLYKRVVSCGLAFGAKRWMATLDRQCQRLTNSSSTNIAALDICVVTGQEGRKSVMKLAERMVRSFCSGVGAATAHNWTTLSTIDSDDVRVMARKSLDDPGRPPGIVLNAATSFWIPIPPNRVFHFLRDQNTRNQWDILSNGGLVQEMARIGNDRNPGNCVSLLRVNSANSSQSNMLILQESCSDDISGSYIIYAPVDTVAMNMVLSGGDPDYVALLPSGFAILPDGPPIGADGPSGILEFGSGGSLLTVAFQILVDSAPTAKLSLGSVATVNSLIKCTVERIRAALMCDQPMN 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5088180 5095989 - CcPI632755_03g004850.1 Cco03g0485 173844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0485 737 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco03g0485 737 SUPERFAMILY Bet v1-like 244 473 - -
Cco03g0485 737 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 55 732 IPR042160 -
Cco03g0485 737 SMART START_1 253 472 IPR002913 GO:0008289(InterPro)
Cco03g0485 737 SUPERFAMILY Homeodomain-like 48 119 IPR009057 -
Cco03g0485 737 CDD START_ArGLABRA2_like 248 471 - -
Cco03g0485 737 Coils Coil 166 186 - -
Cco03g0485 737 Pfam START domain 254 472 IPR002913 GO:0008289(InterPro)
Cco03g0485 737 SUPERFAMILY Bet v1-like 499 727 - -
Cco03g0485 737 FunFam Homeobox-leucine zipper protein GLABRA 2 253 471 - -
Cco03g0485 737 ProSiteProfiles START domain profile. 244 475 IPR002913 GO:0008289(InterPro)
Cco03g0485 737 FunFam Homeobox-leucine zipper protein HDG1 50 134 - -
Cco03g0485 737 SMART HOX_1 59 122 IPR001356 GO:0003677(InterPro)
Cco03g0485 737 Gene3D - 54 135 - -
Cco03g0485 737 Coils Coil 112 147 - -
Cco03g0485 737 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677(InterPro)
Cco03g0485 737 CDD homeodomain 60 119 IPR001356 GO:0003677(InterPro)
Cco03g0485 737 Gene3D - 311 473 IPR023393 -
Cco03g0485 737 Pfam Homeodomain 61 116 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0485 Cco-Chr3:5088180 Cco06g0006 Cco-Chr6:87865 2.00E-187 dispersed
Cco02g0186 Cco-Chr2:1784621 Cco03g0485 Cco-Chr3:5088180 5.50E-249 wgd
Cco03g0485 Cco-Chr3:5088180 Cco04g1995 Cco-Chr4:34122675 8.60E-255 wgd
Cco03g0485 Cco-Chr3:5088180 Cco05g1662 Cco-Chr5:23252715 5.10E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58911 PF01852 START 3.70E-48 CL0209 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0485 K09338 - csv:101212604 1343.56