Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0496 ATGTTGCGTTATTCCGACCAATTTTTCTTTTCTCTTGTGTCTACTGAGCCAAATTACGTCTTAGATAGCCGCGTTAATATTGGGTTCGACACGACCCGGTTTAACCAAGTGTTGATGGCCACGTTGACTGCCACGGCGGCTAATGCCTCCTCGTTGGTAGTGGGGGAAATGTTTGCAACACAAGAGGTGATTTTCACATCAAACACAACGCTTTACACGTTGGCACAGTGCAATTCGGATTTGTCAAATACGAATTGCCAAGATTGCTTAATGCAAGTAATTGTTGTACTAATAGAAATGGTGGGAGAATTTTGTTTCCAAGCTGTTATGTTCGTTACGAACTTTATCCATTTTACCAACTCACTAGGACTAATCCGAACAGGGGAAAGCAAATCCTCAAATATGATAATTATAGCCATCGTGGTTCCATTTACTGCTTCCATTCTACTCTTGGTTTTGGGCTTCACTGTCCTCCGTAGAGCAAAGAGGAAATACATTACAGTTAAGGAAGATAGTGCTATAAATGAGATCAACAATGTGGAAGCTCTTCAATTTCATTTCAATACGATTGATGCTGCTACTAACAATTTCTCAGAGGAAAATAGGGTGGGTGAAGGTGGATTTGGTGTAGTCTACAAGGGGAGGCTTGAAAATGGACAAGAGATAGCAGTGAAAAGATTGTCAAGAGTATCCTTGCAAGGTTCCGAAGAGTTCAAGAATGAGGTCATGTTGGTTGCTAAGCTTCAACATAGAAATTTAGTAAGACTACTGGGATTTTGCTTGGAGGGTGGAGAAAAGATACTTATCTATGAATACAATCCCAACAAAAGCCTTGACTATTTCCTATTTGATACTGAGGGACAAAAAGTGTTAGATTGGTTGAGTCGACATAAGATCATCAATGGAATTGCTCGAGGAATGTTATATTTACATGAAGATTCTCGACTTCGAGTTATTCATCATGATCTTAAAGCTAGCAATGTCTTGTTAGATGAGGAAATGAATCCAAAGATTTCAGATTTTGGTACGGCAAGGATTATTCAAATGGATGAAACTCAAAGAAATACACGTCGAATTGCTGGTACCTACGGTTATATGTCTCCTGAATATGCAATGCACGGAAACTTCTCTACCAAATCTGACGTGTATAGCTTCGGAGTGTTGATGTTGGAAATTATAAATGGAAAGAAAAACTACACTTTTTATTTGTCAGGTCTTGCGGATGACATGTTGAGCTACGCTTGGAAGCTATGGAATGATGGAACTCCATTAGATCTACTCGACTCGAGTTTAAGAGACAAATGCTCAAGAAATATGGTACTTAGATGCATGCATATTGCTTTACTTTGTGTTTATGATGATCCTGGACGGAGACCTTCCATGGCATCCATTGTTCTTATGTTGAATAGTTATTCGGTTACTTTGCCCGAACCTAATGAGCCAACGTTCTTCAAGAGCAATAGAAACAATGAGATTGCAATAGATGGTGATCAATCCAATAGACCGGCTTCTAATACAGTATCTGCAACTGAAATGTACCCACGATGA 1548 39.34 MLRYSDQFFFSLVSTEPNYVLDSRVNIGFDTTRFNQVLMATLTATAANASSLVVGEMFATQEVIFTSNTTLYTLAQCNSDLSNTNCQDCLMQVIVVLIEMVGEFCFQAVMFVTNFIHFTNSLGLIRTGESKSSNMIIIAIVVPFTASILLLVLGFTVLRRAKRKYITVKEDSAINEINNVEALQFHFNTIDAATNNFSEENRVGEGGFGVVYKGRLENGQEIAVKRLSRVSLQGSEEFKNEVMLVAKLQHRNLVRLLGFCLEGGEKILIYEYNPNKSLDYFLFDTEGQKVLDWLSRHKIINGIARGMLYLHEDSRLRVIHHDLKASNVLLDEEMNPKISDFGTARIIQMDETQRNTRRIAGTYGYMSPEYAMHGNFSTKSDVYSFGVLMLEIINGKKNYTFYLSGLADDMLSYAWKLWNDGTPLDLLDSSLRDKCSRNMVLRCMHIALLCVYDDPGRRPSMASIVLMLNSYSVTLPEPNEPTFFKSNRNNEIAIDGDQSNRPASNTVSATEMYPR 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5177807 5180101 + CcPI632755_03g004960.1 Cco03g0496 173855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0496 515 SMART serkin_6 197 472 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0496 515 MobiDBLite consensus disorder prediction 494 515 - -
Cco03g0496 515 Gene3D Phosphorylase Kinase; domain 1 159 272 - -
Cco03g0496 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 318 330 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0496 515 ProSiteProfiles Protein kinase domain profile. 197 483 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0496 515 Gene3D - 23 116 IPR038408 -
Cco03g0496 515 SUPERFAMILY Protein kinase-like (PK-like) 183 494 IPR011009 -
Cco03g0496 515 CDD STKc_IRAK 203 469 - -
Cco03g0496 515 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 65 484 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco03g0496 515 ProSitePatterns Protein kinases ATP-binding region signature. 203 225 IPR017441 GO:0005524(InterPro)
Cco03g0496 515 Gene3D Transferase(Phosphotransferase) domain 1 274 481 - -
Cco03g0496 515 FunFam cysteine-rich receptor-like protein kinase 10 273 475 - -
Cco03g0496 515 FunFam Cysteine-rich receptor-like protein kinase 10 159 272 - -
Cco03g0496 515 ProSiteProfiles Gnk2-homologous domain profile. 15 123 IPR002902 -
Cco03g0496 515 Pfam Protein tyrosine and serine/threonine kinase 200 466 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0496 Cco-Chr3:5177807 Cco03g0498 Cco-Chr3:5187253 4.70E-175 dispersed
Cco03g0496 Cco-Chr3:5177807 Cco03g0497 Cco-Chr3:5184159 9.90E-17 tandem
Cco10g0517 Cco-Chr10:6168963 Cco03g0496 Cco-Chr3:5177807 8.30E-63 wgd
Cco03g0496 Cco-Chr3:5177807 Cco04g2005 Cco-Chr4:34196418 1.40E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86643 PF07714 PK_Tyr_Ser-Thr 1.40E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0496 - - - 0.0