Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0498 ATGCTCAATTTTCTTACTTTCCTCTTCTTCCTCAATTTCCTTACCCATGGAAACGCTCAGACCCCAGTTCCTTACCCATATCGCAGTTGCTTGTCCGGCAATTTCACTCACAACAGCACCTATCAGTCTAACCTCAATCTTCTCTTTTCAAATCTTTCCACCAAGGGCCCCCCAAGAAACAGATTCTTCAATACTTCCATCGGCCGACCCCCAAACGACGCCGTTTACGGTCTCTTCCAGTGCCGTGGAGACGTCACCGACGCCGTCTGTCGCACTTTCTTAGACACCGCAACCAGAGACGCAGAGCGGCTGTACTGTCCTCTAAGAAAAGGCGCTGTGATTTGGTACGACGAAATCATATTCCGCTATTCCGACCAACCTTTCTTTTCCACGGTTTCCTCAAACCCAAGTATGCAGTTACAGAATACGGGTGATATAGACGTCGACAAGGCTCGATTCAACCAACTAGTCATGTCCACGTTGAGAGCCACCGCGGCTCAGGCGGCGAACGCCTCTTTGGTGGGCAATTTCTTTGCGACCCAGATGGCTAATTTTACAGAAGACCTAACCCTTTACACATTAGCTCAGTGTACCGGCGATTTGTCCAATACGGATTGCGAAGGATGCTTACGCCAAGCTACCAACTCAATTCCAAGTTGTTGTAGTAATAAACGAGGCGGGCGCGTTCTGCTTCCCAGCTGTTACGTTCGTTACGAAGTTTACATGTTTTACGAATTAACGCCGACGAATTCCGTACCGCCTCCGGCAACACCGCCTCTTCTTCCTTCTTCTCCTCCGCCAGGGGAAAGAAGGTCCTCAACGGTGTTAATTGTGGCCATTGTAGCTCCAATTACTGTCTCCATACTGCTCTTTGTTGTGGGATGTTGTTTCCTGCGCCTGAGAGCGAAGAACAGATACTCTGCTGCGAAGGAAGATAGTGTTGTTAATGAGATGACGACTGTGGAATCTCTGCAATTTGATTTAAAAACAATCGAAGCTGCTACCAACAAATTCTCAGAGGAAAACAGGTTGGGAGAAGGTGGATTTGGTGCTGTCTTCAAGGGTAGGCTTGAAAATGGACAAGAGATAGCAGTGAAGAGGCTGTCAAGAGGATCTTTGCAAGGTTCTGAAGAGTTCAAGAATGAGGTTATGTTGGTTGCTAAGCTTCAACATAGAAATCTTGTAAGGTTATTGGGATTCTGCTTGGAGGGGGAAGAAAAGATTCTCATCTATGAATACATTCCCAACAAAAGCCTTGACTTTTTCTTGTTTGATCTAGAGGGACAGAGGCAGTTGGATTGGTTGAAACGATATAAGATCATCAATGGAATTGCTCGAGGAATATTGTATCTGCATGAAGATTCTCGTCTTAGAATTATTCACCGTGATCTTAAAGCGAGTAACATCTTGTTAGACAAAGATATGAATGCAAAAATTTCAGACTTTGGCATGGCAAGAATTATTCAAATGGATCAAACCCAAGGAAATACAAATAGGATCGTTGGTACCTATGGTTACATGTCTCCTGAATATGCAATGCACGGAAATTTCTCAATGAAATCTGATGTGTATAGCTTTGGAGTATTAGTGTTAGAGATTTTAAGTGGTAAGAAAAACAACACCTTTTACTTGTTAGATCTCGCGGAAGACATTTTGACATATGCTTGGAAATTGTGGAAGGATGGAACGCCATTAGAGTTATTGGATCCAATGTTGAGAGATAATTACTCGAGAAATGAGGTGGTTAGATGCATTCATATTGCTTTATTATGTGTTCAAGAGGATCCTAACAGCAGACCTTCCATGGCTTCCATTGTTCTTATGCTTAATAGTTATTCCGTTACTTTGCCATTGCCTGAACAGCCAGCATTCTTCATGCGTAGTAAAGACAATCACATTACAATGGGCAGCGATCATTCTACTAATAAGTCTATTCAGTTTTCTGTCAATGAAACATCTATATCTGAGTTGCATCCACGATGA 1983 43.37 MLNFLTFLFFLNFLTHGNAQTPVPYPYRSCLSGNFTHNSTYQSNLNLLFSNLSTKGPPRNRFFNTSIGRPPNDAVYGLFQCRGDVTDAVCRTFLDTATRDAERLYCPLRKGAVIWYDEIIFRYSDQPFFSTVSSNPSMQLQNTGDIDVDKARFNQLVMSTLRATAAQAANASLVGNFFATQMANFTEDLTLYTLAQCTGDLSNTDCEGCLRQATNSIPSCCSNKRGGRVLLPSCYVRYEVYMFYELTPTNSVPPPATPPLLPSSPPPGERRSSTVLIVAIVAPITVSILLFVVGCCFLRLRAKNRYSAAKEDSVVNEMTTVESLQFDLKTIEAATNKFSEENRLGEGGFGAVFKGRLENGQEIAVKRLSRGSLQGSEEFKNEVMLVAKLQHRNLVRLLGFCLEGEEKILIYEYIPNKSLDFFLFDLEGQRQLDWLKRYKIINGIARGILYLHEDSRLRIIHRDLKASNILLDKDMNAKISDFGMARIIQMDQTQGNTNRIVGTYGYMSPEYAMHGNFSMKSDVYSFGVLVLEILSGKKNNTFYLLDLAEDILTYAWKLWKDGTPLELLDPMLRDNYSRNEVVRCIHIALLCVQEDPNSRPSMASIVLMLNSYSVTLPLPEQPAFFMRSKDNHITMGSDHSTNKSIQFSVNETSISELHPR 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5187253 5190313 + CcPI632755_03g004980.1 Cco03g0498 173857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0498 660 Gene3D Phosphorylase Kinase; domain 1 300 413 - -
Cco03g0498 660 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524(InterPro)
Cco03g0498 660 ProSiteProfiles Gnk2-homologous domain profile. 23 128 IPR002902 -
Cco03g0498 660 ProSiteProfiles Gnk2-homologous domain profile. 134 243 IPR002902 -
Cco03g0498 660 SUPERFAMILY Protein kinase-like (PK-like) 323 642 IPR011009 -
Cco03g0498 660 Pfam Protein tyrosine and serine/threonine kinase 341 607 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0498 660 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 160 625 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER)
Cco03g0498 660 SMART serkin_6 338 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0498 660 Gene3D Transferase(Phosphotransferase) domain 1 414 616 - -
Cco03g0498 660 CDD STKc_IRAK 344 610 - -
Cco03g0498 660 FunFam cysteine-rich receptor-like protein kinase 10 414 616 - -
Cco03g0498 660 FunFam Cysteine-rich receptor-like protein kinase 10 300 413 - -
Cco03g0498 660 FunFam Cysteine-rich receptor-like protein kinase 25 136 243 - -
Cco03g0498 660 Gene3D - 24 128 IPR038408 -
Cco03g0498 660 Gene3D - 136 243 IPR038408 -
Cco03g0498 660 ProSiteProfiles Protein kinase domain profile. 338 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0498 660 Pfam Salt stress response/antifungal 33 126 IPR002902 -
Cco03g0498 660 Pfam Salt stress response/antifungal 151 240 IPR002902 -
Cco03g0498 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0173 Cco-Chr2:1687669 Cco03g0498 Cco-Chr3:5187253 1.00E-29 dispersed
Cco03g0496 Cco-Chr3:5177807 Cco03g0498 Cco-Chr3:5187253 4.70E-175 dispersed
Cco03g0498 Cco-Chr3:5187253 Cco04g2006 Cco-Chr4:34204500 1.10E-144 dispersed
Cco03g0500 Cco-Chr3:5201598 Cco03g0498 Cco-Chr3:5187253 6.30E-52 dispersed
Cco03g0505 Cco-Chr3:5216829 Cco03g0498 Cco-Chr3:5187253 1.20E-19 dispersed
Cco05g0457 Cco-Chr5:3691269 Cco03g0498 Cco-Chr3:5187253 4.20E-09 dispersed
Cco06g0053 Cco-Chr6:496050 Cco03g0498 Cco-Chr3:5187253 5.40E-14 dispersed
Cco06g0767 Cco-Chr6:8775820 Cco03g0498 Cco-Chr3:5187253 2.60E-11 dispersed
Cco03g0497 Cco-Chr3:5184159 Cco03g0498 Cco-Chr3:5187253 1.60E-19 tandem
Cco03g0498 Cco-Chr3:5187253 Cco03g0499 Cco-Chr3:5198418 5.40E-49 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86644 PF07714 PK_Tyr_Ser-Thr 7.80E-50 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0498 - - - 0.0