Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0504 | ATGTTCCACTCAAGCCTTCTCTTTTCTATCATCATCTTCTCCTTCTTTCTCTTCATCAGCCCTGCAATTCCTCAGCCAAATACCAATTGTTCAAACGACAATGACAATTGCACAGCCAGCAGCACCTACAGAGCCACAATTATTACACCCAATTGTAATCTTGGCTATGAGATTATCAATTTCTTTGACTCTGCAGCTGTTTCCAGAGTTTCTCGGTCGACCTCGCCGCCGACACCGCCATCCCCTCTCTTGCCACTCTCACCTCCCTCTCTTTCACCAAATACAACAACCAATGTCAAAGAAAAGGAGTCGAAGAGATTGAAGATTGTCATCATTATAGTTCTCCCAGTGGTTGTTGTAGTTGTGGTATTAATTGTCCGCATCTTCATCTTTTTAAGAGCAAGAAAACAAAGGGATGGAGTTGCAAGTTTACAAGTGGATGACACTGCAGATTTTGAAACTTTGGTATTTGACATCAGTACTATAAGAACTGCAATAGATGACTTCTCAGATAAAAATTATATCGGACAAGGTAGATTTGGAGCTGTTTACAAGGGAAGCCTTGTTAATGGACAAGAAATAGCAGTGAAGTTTCTCAAACAGAACCCCATGGAAGGAGAGAGTGAGTTTAAGAATGAAGTCCTGTCAATGGCCAAACTTCAACACCGGAATTTAGTTCGGTTTCTTGGTTTCTGCCTCCACAAAGACATGATGATTTTCGTGTCCGAGTTCGTGCAAAACTCAAGTCTTGATAAATTCATATTTGAGCCATTGAAAGGTCAAGATTTGGACTGGGGAACGCGCTACAAAATCATTCAAGGCATTGCTACAGGCCTTGTTTATCTTCATCAAGATTCTCAAATTAAAGTTGTTCATAGAGATCTCAAAGCTACAAATATTTTATTAGATGCACAGATGAATCCTAAAATTTCTGATTTTTTCATGGTAAAGTTGTTTCAAGAAGGTCCAGCTCAAGAAAATACATGTCTGGGATACATGGCTCCAGAATATATTGTCTCTGGAATGTCGTCAAAAAAGTCGGATGTGTTTAGTTTCGGTGTGTTAGTTATTGAGATTGTGACTGGCCAAAAAATCACATCTTTCTGTGAGGAAAATGAGGGAAAGGACATATATGATCTTATATACTATGTATGGAGAAACTGGAGGGCAGGAACAATACTAAATGTTGTAGATCCTATATTGCGAGGTGGCTCAAGTAATGAAATAAAGAAATGTATCAACATTGGATTGCTTTGTGCTCAAGAAAATAAAGCTAACAGGCCAACTATGGAAACAGTACTTCTCATGCTTAACAGTGACACAATCACTCTGCCAATACTTTCTCCGCTAGGTGATTACATGAATAGGAGTCCCAAATCAGACATGTCTTCTTCACAAGAGAGGTCTTCTTCCCATGTAATAGAGATAGAATGA | 1434 | 39.19 | MFHSSLLFSIIIFSFFLFISPAIPQPNTNCSNDNDNCTASSTYRATIITPNCNLGYEIINFFDSAAVSRVSRSTSPPTPPSPLLPLSPPSLSPNTTTNVKEKESKRLKIVIIIVLPVVVVVVVLIVRIFIFLRARKQRDGVASLQVDDTADFETLVFDISTIRTAIDDFSDKNYIGQGRFGAVYKGSLVNGQEIAVKFLKQNPMEGESEFKNEVLSMAKLQHRNLVRFLGFCLHKDMMIFVSEFVQNSSLDKFIFEPLKGQDLDWGTRYKIIQGIATGLVYLHQDSQIKVVHRDLKATNILLDAQMNPKISDFFMVKLFQEGPAQENTCLGYMAPEYIVSGMSSKKSDVFSFGVLVIEIVTGQKITSFCEENEGKDIYDLIYYVWRNWRAGTILNVVDPILRGGSSNEIKKCINIGLLCAQENKANRPTMETVLLMLNSDTITLPILSPLGDYMNRSPKSDMSSSQERSSSHVIEIE | 477 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 5214171 | 5216274 | + | CcPI632755_03g005040.1 | Cco03g0504 | 173863 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0504 | 477 | SMART | serkin_6 | 169 | 442 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0504 | 477 | Gene3D | Transferase(Phosphotransferase) domain 1 | 245 | 443 | - | - | |
Cco03g0504 | 477 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 | 27 | 444 | - | GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Cco03g0504 | 477 | SUPERFAMILY | Protein kinase-like (PK-like) | 149 | 437 | IPR011009 | - | |
Cco03g0504 | 477 | MobiDBLite | consensus disorder prediction | 72 | 99 | - | - | |
Cco03g0504 | 477 | FunFam | Lectin-domain containing receptor kinase A4.3 | 245 | 455 | - | - | |
Cco03g0504 | 477 | Pfam | Protein tyrosine and serine/threonine kinase | 173 | 433 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco03g0504 | 477 | Gene3D | Phosphorylase Kinase; domain 1 | 133 | 244 | - | - | |
Cco03g0504 | 477 | MobiDBLite | consensus disorder prediction | 455 | 477 | - | - | |
Cco03g0504 | 477 | ProSitePatterns | Protein kinases ATP-binding region signature. | 175 | 197 | IPR017441 | GO:0005524(InterPro) | |
Cco03g0504 | 477 | MobiDBLite | consensus disorder prediction | 75 | 89 | - | - | |
Cco03g0504 | 477 | ProSiteProfiles | Protein kinase domain profile. | 169 | 447 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0504 | 477 | MobiDBLite | consensus disorder prediction | 457 | 471 | - | - | |
Cco03g0504 | 477 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 290 | 302 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0504 | Cco-Chr3:5214171 | Cco03g0507 | Cco-Chr3:5238809 | 1.10E-93 | dispersed | |
Cco03g0503 | Cco-Chr3:5209213 | Cco03g0504 | Cco-Chr3:5214171 | 2.60E-154 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86646 | PF07714 | PK_Tyr_Ser-Thr | 8.40E-44 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0504 | - | - | - | 0.0 |