Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0504 ATGTTCCACTCAAGCCTTCTCTTTTCTATCATCATCTTCTCCTTCTTTCTCTTCATCAGCCCTGCAATTCCTCAGCCAAATACCAATTGTTCAAACGACAATGACAATTGCACAGCCAGCAGCACCTACAGAGCCACAATTATTACACCCAATTGTAATCTTGGCTATGAGATTATCAATTTCTTTGACTCTGCAGCTGTTTCCAGAGTTTCTCGGTCGACCTCGCCGCCGACACCGCCATCCCCTCTCTTGCCACTCTCACCTCCCTCTCTTTCACCAAATACAACAACCAATGTCAAAGAAAAGGAGTCGAAGAGATTGAAGATTGTCATCATTATAGTTCTCCCAGTGGTTGTTGTAGTTGTGGTATTAATTGTCCGCATCTTCATCTTTTTAAGAGCAAGAAAACAAAGGGATGGAGTTGCAAGTTTACAAGTGGATGACACTGCAGATTTTGAAACTTTGGTATTTGACATCAGTACTATAAGAACTGCAATAGATGACTTCTCAGATAAAAATTATATCGGACAAGGTAGATTTGGAGCTGTTTACAAGGGAAGCCTTGTTAATGGACAAGAAATAGCAGTGAAGTTTCTCAAACAGAACCCCATGGAAGGAGAGAGTGAGTTTAAGAATGAAGTCCTGTCAATGGCCAAACTTCAACACCGGAATTTAGTTCGGTTTCTTGGTTTCTGCCTCCACAAAGACATGATGATTTTCGTGTCCGAGTTCGTGCAAAACTCAAGTCTTGATAAATTCATATTTGAGCCATTGAAAGGTCAAGATTTGGACTGGGGAACGCGCTACAAAATCATTCAAGGCATTGCTACAGGCCTTGTTTATCTTCATCAAGATTCTCAAATTAAAGTTGTTCATAGAGATCTCAAAGCTACAAATATTTTATTAGATGCACAGATGAATCCTAAAATTTCTGATTTTTTCATGGTAAAGTTGTTTCAAGAAGGTCCAGCTCAAGAAAATACATGTCTGGGATACATGGCTCCAGAATATATTGTCTCTGGAATGTCGTCAAAAAAGTCGGATGTGTTTAGTTTCGGTGTGTTAGTTATTGAGATTGTGACTGGCCAAAAAATCACATCTTTCTGTGAGGAAAATGAGGGAAAGGACATATATGATCTTATATACTATGTATGGAGAAACTGGAGGGCAGGAACAATACTAAATGTTGTAGATCCTATATTGCGAGGTGGCTCAAGTAATGAAATAAAGAAATGTATCAACATTGGATTGCTTTGTGCTCAAGAAAATAAAGCTAACAGGCCAACTATGGAAACAGTACTTCTCATGCTTAACAGTGACACAATCACTCTGCCAATACTTTCTCCGCTAGGTGATTACATGAATAGGAGTCCCAAATCAGACATGTCTTCTTCACAAGAGAGGTCTTCTTCCCATGTAATAGAGATAGAATGA 1434 39.19 MFHSSLLFSIIIFSFFLFISPAIPQPNTNCSNDNDNCTASSTYRATIITPNCNLGYEIINFFDSAAVSRVSRSTSPPTPPSPLLPLSPPSLSPNTTTNVKEKESKRLKIVIIIVLPVVVVVVVLIVRIFIFLRARKQRDGVASLQVDDTADFETLVFDISTIRTAIDDFSDKNYIGQGRFGAVYKGSLVNGQEIAVKFLKQNPMEGESEFKNEVLSMAKLQHRNLVRFLGFCLHKDMMIFVSEFVQNSSLDKFIFEPLKGQDLDWGTRYKIIQGIATGLVYLHQDSQIKVVHRDLKATNILLDAQMNPKISDFFMVKLFQEGPAQENTCLGYMAPEYIVSGMSSKKSDVFSFGVLVIEIVTGQKITSFCEENEGKDIYDLIYYVWRNWRAGTILNVVDPILRGGSSNEIKKCINIGLLCAQENKANRPTMETVLLMLNSDTITLPILSPLGDYMNRSPKSDMSSSQERSSSHVIEIE 477
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 5214171 5216274 + CcPI632755_03g005040.1 Cco03g0504 173863
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0504 477 SMART serkin_6 169 442 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0504 477 Gene3D Transferase(Phosphotransferase) domain 1 245 443 - -
Cco03g0504 477 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 27 444 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco03g0504 477 SUPERFAMILY Protein kinase-like (PK-like) 149 437 IPR011009 -
Cco03g0504 477 MobiDBLite consensus disorder prediction 72 99 - -
Cco03g0504 477 FunFam Lectin-domain containing receptor kinase A4.3 245 455 - -
Cco03g0504 477 Pfam Protein tyrosine and serine/threonine kinase 173 433 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0504 477 Gene3D Phosphorylase Kinase; domain 1 133 244 - -
Cco03g0504 477 MobiDBLite consensus disorder prediction 455 477 - -
Cco03g0504 477 ProSitePatterns Protein kinases ATP-binding region signature. 175 197 IPR017441 GO:0005524(InterPro)
Cco03g0504 477 MobiDBLite consensus disorder prediction 75 89 - -
Cco03g0504 477 ProSiteProfiles Protein kinase domain profile. 169 447 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0504 477 MobiDBLite consensus disorder prediction 457 471 - -
Cco03g0504 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0504 Cco-Chr3:5214171 Cco03g0507 Cco-Chr3:5238809 1.10E-93 dispersed
Cco03g0503 Cco-Chr3:5209213 Cco03g0504 Cco-Chr3:5214171 2.60E-154 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86646 PF07714 PK_Tyr_Ser-Thr 8.40E-44 CL0016 Cco PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0504 - - - 0.0