Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0517 ATGAACAGGATCCGAGGAAATTTTCTAACGCTTTCAGATTCTTTTAAAATCGGTGCCGCCCTACTAGGTACTCTGTTTCTGATTCACCTTCCGTCGATCACCGTCTTGGAGAAAATGTCGGCTTATTTGTGGAAAAGCTTCGACGAGGATGAAGATCGACCCGAGAAGCCGCGGCGATGTGGAGTTACAGAGATGAGAGGCCCTCATTATACTCTTTCGAGCCAAAATGTTATTCAGGAAATTTTCGAGTCTGTGGGTCAATTTGTCGATGGGTTAAAGTTCTCCGGGGGTTCTCACAGCCTATTGCCGAGGGATTTTATGAAAGAGGTGACGGAAATGGCTCATCGACATGACATCTATGTCAGTACGGGTGACTGGGCGGAGCATTTACTACGCAAAGGTCCATCCGGTTTCAAAGAGTATGTGGAGGAATGTAAGCTCTTAGGATTTGACACTATTGAGCTCAACGTGGGATCACTTGAAGTTCCTGAAGAAACTCTTCTGAGATACGTGCGTTTGATTAAGAACGGTGGCCTTAGGGCTAAGCCTCAGTTCGCAGTGAAGTTCAACAAGTCCGACATTCCCATCAGTGGCAATCGAGCATTTGGAGCTTATATTGTTCCGAGACCACGATCTTCTGAACTTGTAGAAGATGTTGATCTTTTGATCAGAAGGGCTGAGAGATGCCTAGAAGCTGGGGCAGACATGATTATGATTGATGCAGATGATGTCAGTAAACACGCCGATTCTCTTCGAGCAGATATTATTGCCAAGATCATTGGGCGTCTTGGTCTAGAGAAAACGATGTTTGAAGCATCGAATCCCAGAACATCAGAGTGGTTTATCAATCATTACGGTCCAAAGGTGAATCTTTTTGTGGATCACTCTCAAGTTATGGATCTGGAGTGCCTCCGGGGTCGCAACCTGGGTCAATTAGGTGGTGGCCTTTTCGATGTCACAAAGTACGGTGCCAAACCTAATGAAGATATTACTACGAATTTGAAGTTTAATTTCATCACTAATTCATTAGTGAAGGACATAACTTCATTGGATAGCAAGAATTTTCATATCAACCTTTTGGGCTGCAAGAATCTTACCTTTGACCACGTGACAATTACTGCACCAGATAATAGTCCCAACACCGATGGAATTCACTTGAGTAGTTCAGAAGCAATTAACATTCTTAATACCAAAATTGCAACCGGAGATGATTGTATATCTGTGGGAGATAGTAACAAACAAATAGCTATTAGTGATGTTACTTGTGGACCCGGACATGGAATTAGCGTTGGAAGTTTGGGTAAATATAGCAAGGAACAAGCGGTGGAAGGAATTACAGTGAAAAAATGCAAATTGATCAATACGTCGAATGGTGTTAGGATCAAAACATGGCCAGATTCTGTCGGCGCATTTCCAGCCACTGACATGCATTTTGAAGACATTGAAATGGTTAACGTTAGCTTTCCTATCATCATAGACCAAGAATATTGCCCATGGAACCAGTGCAACCGAAAGGTTGCATCAAAAATTAAGATCAGCAAAGTTAGTTTCAAGAACATTAAAGGCACCTCAGCAACTCCTGTTGCAGTCAAACTTCTTTGCAGCAAGAGTTTACCATGTGAGGATGTGGAAGTTGCTAATATTGACCTCACTTATAGTGGAAACCAAGGTCCAATTATATCTCAATGTTCGAATGTGAACCCCATCGTTTCTGGAGTCCAAAACCCTCGCATCTGTGCTGAACCTGTGCCCGTTGATTCTCCATCAACTGACTGA 1776 42.96 MNRIRGNFLTLSDSFKIGAALLGTLFLIHLPSITVLEKMSAYLWKSFDEDEDRPEKPRRCGVTEMRGPHYTLSSQNVIQEIFESVGQFVDGLKFSGGSHSLLPRDFMKEVTEMAHRHDIYVSTGDWAEHLLRKGPSGFKEYVEECKLLGFDTIELNVGSLEVPEETLLRYVRLIKNGGLRAKPQFAVKFNKSDIPISGNRAFGAYIVPRPRSSELVEDVDLLIRRAERCLEAGADMIMIDADDVSKHADSLRADIIAKIIGRLGLEKTMFEASNPRTSEWFINHYGPKVNLFVDHSQVMDLECLRGRNLGQLGGGLFDVTKYGAKPNEDITTNLKFNFITNSLVKDITSLDSKNFHINLLGCKNLTFDHVTITAPDNSPNTDGIHLSSSEAINILNTKIATGDDCISVGDSNKQIAISDVTCGPGHGISVGSLGKYSKEQAVEGITVKKCKLINTSNGVRIKTWPDSVGAFPATDMHFEDIEMVNVSFPIIIDQEYCPWNQCNRKVASKIKISKVSFKNIKGTSATPVAVKLLCSKSLPCEDVEVANIDLTYSGNQGPIISQCSNVNPIVSGVQNPRICAEPVPVDSPSTD 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5278103 5288147 + CcPI632755_03g005170.1 Cco03g0517 173876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0517 591 SUPERFAMILY Pectin lyase-like 330 581 IPR011050 -
Cco03g0517 591 Pfam (2R)-phospho-3-sulfolactate synthase (ComA) 52 308 IPR003830 -
Cco03g0517 591 SMART pbh1 362 388 IPR006626 -
Cco03g0517 591 SMART pbh1 442 463 IPR006626 -
Cco03g0517 591 SMART pbh1 389 410 IPR006626 -
Cco03g0517 591 ProSitePatterns Polygalacturonase active site. 419 432 IPR000743 GO:0004650(InterPro)|GO:0005975(InterPro)
Cco03g0517 591 Gene3D Aldolase class I 47 311 IPR013785 -
Cco03g0517 591 Pfam Glycosyl hydrolases family 28 327 567 IPR000743 GO:0004650(InterPro)|GO:0005975(InterPro)
Cco03g0517 591 SUPERFAMILY (2r)-phospho-3-sulfolactate synthase ComA 51 305 IPR036112 -
Cco03g0517 591 PANTHER - 41 311 IPR052597 -
Cco03g0517 591 Gene3D - 318 577 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0280 Cco-Chr2:2557412 Cco03g0517 Cco-Chr3:5278103 1.70E-123 dispersed
Cco03g0517 Cco-Chr3:5278103 Cco03g0519 Cco-Chr3:5303614 1.10E-156 dispersed
Cco03g0517 Cco-Chr3:5278103 Cco03g0518 Cco-Chr3:5295094 1.10E-156 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0517 - - - 0.0