Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0535 ATGATAATGAAATGCTCTATGAATCTTCTTCCTCCTAAACGGGCTTTCTTCTTCATTTCGTTGTTTTTGGTCATTTTTGTTGGTAGCCAATTTAGCGTTGGCCTTGAGAATTCGAATTCTACCATTCAAATCATCAAAGATGGAGATCGGTTGACATCCAGCGACAATAATTTCGTTCTTGGATTCTTCGGTTTCAACAATTCCACCACTCGCCGATATGTCGGAATTTGGTACAATAAAATTCCTCAATTTACCCTCGTTTGGGTTGCAAATAGAAACCAACCCCTTAACGACAACACAGGAACCTTAGCCCTCGACCGCCGTGGAAATCTCCTCCTTTTCACCTCCAAACAAACCGTATCTCTTTGGTCTACAAACGCTACCATTCAATCAAACGACGACGTGTTGATTAAGCTTTGGAATACGGGAAATTTCGCCCTGATTGAACGACAAAGCCAAAAGGTTATATGGCAAAGCTTTGATTATCCATCTCATGTCTTTCTTCCCTACATGAAATTGGGGTTGAACTGGCGGACCGGGATTAACTGGTTCCTAACGTCATGGAAGGCGCAGGACGATCCGGGAACTGGGAACTTCAGTTGTCGGATAGACCCGACAGGGTATCCGCAATTAATTTTGTACAATGGGAATGTTCCGCGGTGGCGGATTGGATCATGGACAGGGCAGAAATGGTCTGGAGTACCTGAAATGACAAGGTCATTTATATTCAACACAACCTACATCGACAACACAGAAGAGATTTCCATAATGGACAGTGTCACAACCGACACGGTTTTAAGTAGTATGAGTCTAGACGAATCCGGTTTGTTGCATCGGTCCATGTGGAATGAAGAACAACAAAAGTGGAAAGATTATTGGACGGGTCCGACCGAGTGGTGCGACAGCTACAATAGATGCTATCCAAACACTAACTGTGACCAGTACGACACGGAGCAGTTCTATTGCAAGTGCTTGCCTGGCTTCGAACCACGATCGAACCAAAGTTGGTTACGGGGAGATCCGTCGGGTGGGTGCATCAGGAAGAGGCCCAACGCCATGTGTCGCAGTGGAGAGGGATTTGTGAGGGTGTCACGTGTGAAGGTCCCGGATACGTCGATGGCACGTGCAGATTTGAGTATGAGTTTGGACGCGTGCGCACAAGCATGTGTAAATAATTGTAACTGTACGGCTTACACGAGCGCAAATGAGGCGACGGGGAGCGGGTGCGTGATGTGGTATGGAGATTTGATAGACACACGGACCTTTGCCAACACGGGTCAAGATCTATATGTAAGAGTTGATGCTATTGAATTAGCTCAATATAATCCACAAAATTCAAATCCTCATCCAACAAAGAAGATGATAGTAATTGTTGTTGTATCTTTTGTTGCATTGGTGTTACTCGTGACCTCACTAATTTGTTTATGGAAAATGATTAGAAAAAGGAGGGAGAGATCGACGAGTCTATCTAATAACTTTGAGCATTCTCCAAATTCAAAGGAATTTGATGAAAGTAGAACAAATTCAGATTTGCCTATATTTGACTTGTTGACTATAACAAAGGCAACCGATGATTTTTCACTTAATAACAAGCTTGGAAAAGGTGGCTTTGGCACAGTTTATAAGGGCAAGCTTATGAATGGAGAGGAAATTGCAGTTAAAAGGCTGGCTAAGAATTCAGGGCAAGGAGTTGGAGAGTTCAAGAATGAAGTTACATTAATTGCAAAGCTCCAACATAGAAACCTCGTCAGAATCTTAGGCTATTGCGTTAAGAATGAAGAGAAAATGCTTGTATATGAATACTTACCAAACAAAAGCTTGGACTATTTCATCTTTGATGAAAGCAAGAGGGCTTTGCTCAACTGGAAAAAACGTTTTGAAATTATATGTGGCATCGCACGAGGAATCTTATATCTTCATCAAGATTCAAGATTGAAAATCATTCATCGAGATTTGAAGGCCAGCAATATACTACTGGATGCTGATTTGAATCCCAAAATCGCAGATTTTGGCATGGCAAGGATAGTTGGCCAAGATCAAATTCAAGCAAACACAAATCGCATTGTTGGAACATATGGTTATATGTCACCAGAGTATGCAATGGAAGGCCTATTTTCAGTGAAATCCGATGTTTATAGCTTTGGAGTTTTGGTGCTAGAGGTGATTACAAGCAAAAAGAACACTGGCTGTATATCCAACTACGTAAATTTGGTTGGACAAGTTTGGGAGCTCTGGAAATTGGACAATGCAATGGAATTAGTGGACTCAAGTTTGGAAGAAGGATCAAGTTGTGAATACGAAATCATGAGATGCCTCCAAATTGGGCTATTGTGTGTTCAAGAGGATCCGACTAACCGTCCGACCATGTCGAATGTGGTTTTCATGTTGGAGAATGAAGTGAGTCTTCCTTCTCCAAAGAAACCTGCTTTCATTTTAAAGAGGAAAAGCAACCATGGAGATCCATCCACCAGTACTGAAGGAGCCAACTCCAGTACTACTGAGGGAGCCAACTCTCTAAATGATCTAACAATTTCCATAATCGATGCTCGTTAA 2553 42.19 MIMKCSMNLLPPKRAFFFISLFLVIFVGSQFSVGLENSNSTIQIIKDGDRLTSSDNNFVLGFFGFNNSTTRRYVGIWYNKIPQFTLVWVANRNQPLNDNTGTLALDRRGNLLLFTSKQTVSLWSTNATIQSNDDVLIKLWNTGNFALIERQSQKVIWQSFDYPSHVFLPYMKLGLNWRTGINWFLTSWKAQDDPGTGNFSCRIDPTGYPQLILYNGNVPRWRIGSWTGQKWSGVPEMTRSFIFNTTYIDNTEEISIMDSVTTDTVLSSMSLDESGLLHRSMWNEEQQKWKDYWTGPTEWCDSYNRCYPNTNCDQYDTEQFYCKCLPGFEPRSNQSWLRGDPSGGCIRKRPNAMCRSGEGFVRVSRVKVPDTSMARADLSMSLDACAQACVNNCNCTAYTSANEATGSGCVMWYGDLIDTRTFANTGQDLYVRVDAIELAQYNPQNSNPHPTKKMIVIVVVSFVALVLLVTSLICLWKMIRKRRERSTSLSNNFEHSPNSKEFDESRTNSDLPIFDLLTITKATDDFSLNNKLGKGGFGTVYKGKLMNGEEIAVKRLAKNSGQGVGEFKNEVTLIAKLQHRNLVRILGYCVKNEEKMLVYEYLPNKSLDYFIFDESKRALLNWKKRFEIICGIARGILYLHQDSRLKIIHRDLKASNILLDADLNPKIADFGMARIVGQDQIQANTNRIVGTYGYMSPEYAMEGLFSVKSDVYSFGVLVLEVITSKKNTGCISNYVNLVGQVWELWKLDNAMELVDSSLEEGSSCEYEIMRCLQIGLLCVQEDPTNRPTMSNVVFMLENEVSLPSPKKPAFILKRKSNHGDPSTSTEGANSSTTEGANSLNDLTISIIDAR 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5490912 5495363 - CcPI632755_03g005350.1 Cco03g0535 173894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0535 850 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 491 601 - -
Cco03g0535 850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0535 850 CDD EGF_CA 300 332 - -
Cco03g0535 850 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 27 808 - -
Cco03g0535 850 ProSiteProfiles PAN/Apple domain profile. 354 434 IPR003609 -
Cco03g0535 850 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 226 IPR036426 -
Cco03g0535 850 MobiDBLite consensus disorder prediction 817 836 - -
Cco03g0535 850 Pfam PAN-like domain 354 419 IPR003609 -
Cco03g0535 850 MobiDBLite consensus disorder prediction 812 836 - -
Cco03g0535 850 Pfam D-mannose binding lectin 85 189 IPR001480 -
Cco03g0535 850 SMART ntp_6 355 433 IPR003609 -
Cco03g0535 850 ProSiteProfiles Protein kinase domain profile. 526 810 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0535 850 ProSiteProfiles Bulb-type lectin domain profile. 36 160 IPR001480 -
Cco03g0535 850 Pfam S-locus glycoprotein domain 221 331 IPR000858 GO:0048544(InterPro)
Cco03g0535 850 PIRSF SRK 7 850 IPR024171 GO:0004674(InterPro)
Cco03g0535 850 SUPERFAMILY Protein kinase-like (PK-like) 502 796 IPR011009 -
Cco03g0535 850 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 602 804 - -
Cco03g0535 850 MobiDBLite consensus disorder prediction 487 506 - -
Cco03g0535 850 Gene3D - 36 160 IPR036426 -
Cco03g0535 850 SMART serkin_6 526 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0535 850 Pfam Protein tyrosine and serine/threonine kinase 527 793 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0535 850 Gene3D Phosphorylase Kinase; domain 1 500 601 - -
Cco03g0535 850 CDD STKc_IRAK 532 798 - -
Cco03g0535 850 CDD B_lectin 43 163 IPR001480 -
Cco03g0535 850 SMART blect_4 42 163 IPR001480 -
Cco03g0535 850 Gene3D Transferase(Phosphotransferase) domain 1 602 805 - -
Cco03g0535 850 CDD PAN_AP_plant 355 433 - -
Cco03g0535 850 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 32 160 - -
Cco03g0535 850 ProSitePatterns Protein kinases ATP-binding region signature. 532 554 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1231 Cco-Chr2:23265474 Cco03g0535 Cco-Chr3:5490912 7.10E-146 dispersed
Cco03g0535 Cco-Chr3:5490912 Cco10g0591 Cco-Chr10:7814722 3.30E-181 dispersed
Cco03g0535 Cco-Chr3:5490912 Cco03g0536 Cco-Chr3:5504421 0.00E+00 tandem
Cco10g0590 Cco-Chr10:7796754 Cco03g0535 Cco-Chr3:5490912 1.10E-190 wgd
Cco02g0150 Cco-Chr2:1545803 Cco03g0535 Cco-Chr3:5490912 7.20E-117 wgd
Cco03g0535 Cco-Chr3:5490912 Cco04g2026 Cco-Chr4:34328358 1.60E-172 wgd
Cco03g0535 Cco-Chr3:5490912 Cco05g1723 Cco-Chr5:25503525 1.80E-184 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86649 PF07714 PK_Tyr_Ser-Thr 1.40E-49 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0535 - - - 0.0