Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0536 ATGAATCCTCTTCTTCCTAAAAGGGCCGTCTTCCTCATTTCTTTGTATTTGATATTTTTTGTGGGCAGCCATTTGAGCGTTGGCCTTGAGAATTCGAGTTCTACCATTCAAATCATCAAAGATGGAGATCGGTTGGTATCCAGCAACAAGAATTTCGCTCTTGGATTCTTCAGTTTCGACAATTCCACAACTCGCCGATATGTCGGAATTTGGTACAACAAAATTCCTCAACTAACCCTCGTTTGGGTTGCCAATAGAAACCAACCCCTCAACGACACCTCAGGAACCTTAGCCCTCGACCGTCATGGAAACGTCGTGGTTTTTACCCCAACACAAACTGTATCTCTTTGGTCTACGAACGCCTCCATCCAATCAAGTAACGACGTGTCGATTGAGCTTTGGAATACAGGAAATCTCGCCCTGATTGAACGACGAAGCCAAAAGGTTATATGGCAAAGCTTTGATTATCCATCTCATGTCCTTCTTCCCAACATGAAAATGGGAGTGAACCGGCGGACTGGGTTCAGCTGGTTCCTAACTTCATGGAAGGCGCAAGATGATCCGGGAACCGGGAACTTTAGTTGTCGGATTGACCCGACCGGGTATCCGCAACTGATTTTGTACGACGGGGATGCTCCACGGTGGCGGGGAGGATCGTGGACGGGGCGAAGATGGACCGGAGTACCTGAAATGACGAGGTCATTTATAATCAACACATCATATGTGGACAACAGTGAAGAGATTTCCTTAACAAACGGTGTAACGGTGGACACGGTTTTAATGAGAATGACTCTAGATGAATTCGGTTTGGTGCATCGATCCACATGGAACGAAGAAGAGAAAAAGTGGATTGAATTTTGGTCAGCTCCAATCGAATGGTGTGACAGTTACAACCGGTGCGGTTTGAACAGCAACTGTGACCCATACAACGCAGATCAGTTCCAGTGCAAGTGCTTACCTGGGTTCGAACCACAGTCGAGCCAAAATTGGTTCTTAAGAGATCCGTCGGGTGGGTGCGTCAGGAAGAGGTCGAACGCCACGTGTCGGAGTGGAGAGGGTTTTGTGAAAGTGTCACGTGTGAAGGTGCCAGATACATCGACGGCACGTGTGGATAAGAGTATGAGTTTAGAAGCGTGTGAACAAGCGTGTGTAAATGATTGTAATTGCACGGCTTACACAAGTGCAAATGAGACGACAGGAACCGGGTGCATGATGTGGTATGGAGATTTGGTTGACACGCGGACCTATGCCCACGTGGGTCAAGATCTTTATGTAAGGGTTGATGCTATTGAATTAGCTCAATACGCACAAAATTCAAATCGCCATCCAACGAAGAAGGTGATAGCAACTGTTGTTGTGTCTTTTGTTGCATTGGTGCTACTCGTGACCTCGCTAATTTTTTTATGGGAAACAACTAGAAAAGGAAGGGACAGATCAACAACCTTATCTCTTAACTTTGGAGAATTTCCAAATCTGAAGGAATTTGATGAAAGTAGAACAAGTTCAGATTTGCCTGTATTTGACTTGTTGACCATAGCAAAGGCAACAGACAATTTTTCAGTTATTAACAAGCTTGGAGAAGGTGGCTTTGGCGCAGTATATAAGGGCAAACTTACAAATGGAGAGGAAATTGCTGTTAAAAGGTTGGCTAAGAATTCAGGGCAAGGCGTTGGAGAGTTCAAGAATGAAGTAAATTTAATTGCAAAACTCCAACATAGAAACCTCGTCAGAATTTTAGGCTACTGCGTTAAGAATGAAGAGAAAATGCTTGTATATGAATACTTGCCAAACAAAAGCTTGGACTCTTTCATCTTTGATGAAAGCAAGAGGGCTTTGCTTGATTGGAAAAAACGTTTTGAAATCATATGTGGGATTGCACGAGGGATCTTATATCTTCATCAAGATTCTAGATTGAAAATTATTCATCGAGATTTGAAAGCGAGCAATATACTTCTGGATGCTGATTTGAACCCCAAAATAGCAGATTTTGGCATGGCAAGAATATTTGGCCAAGATCAAATTCAAGCAAACACAAATCGCATTGTGGGAACATACGGCTATATGTCACCAGAGTATGCAATGGAAGGCCTATTTTCAGTGAAATCGGATGTATATAGCTTTGGAATTTTGATACTAGAGATGATTACAGGCAAAAAGAACACTAACTATGATTCCTCCCACTTGAACTTGGTTGGACATGTCTGGGAGCTCTGGAAATTGGACAATGTAATGGAATTAGTAGACTCAAGTTTGGAAGAATCAAGTTGTGGATATGAAATCATGAGATGCCTCCAAATTGGGCTATTGTGTGTCCAGGAGGATCCGACAGATCGTCCGACCATGTCCACTGTCATCTTCATGTTGGGGAATGAAGTAGGTCTTCCTTCTCCAAACAAGCCTGCTTTTATTTTAAAGAGAAAGTACAATAGTGGAGATCCATCTACTAGTACTGAAGGACCCAACTCTATAAATGATCTAACAATTTCTATAATCAATGCTCGTTAA 2505 42.87 MNPLLPKRAVFLISLYLIFFVGSHLSVGLENSSSTIQIIKDGDRLVSSNKNFALGFFSFDNSTTRRYVGIWYNKIPQLTLVWVANRNQPLNDTSGTLALDRHGNVVVFTPTQTVSLWSTNASIQSSNDVSIELWNTGNLALIERRSQKVIWQSFDYPSHVLLPNMKMGVNRRTGFSWFLTSWKAQDDPGTGNFSCRIDPTGYPQLILYDGDAPRWRGGSWTGRRWTGVPEMTRSFIINTSYVDNSEEISLTNGVTVDTVLMRMTLDEFGLVHRSTWNEEEKKWIEFWSAPIEWCDSYNRCGLNSNCDPYNADQFQCKCLPGFEPQSSQNWFLRDPSGGCVRKRSNATCRSGEGFVKVSRVKVPDTSTARVDKSMSLEACEQACVNDCNCTAYTSANETTGTGCMMWYGDLVDTRTYAHVGQDLYVRVDAIELAQYAQNSNRHPTKKVIATVVVSFVALVLLVTSLIFLWETTRKGRDRSTTLSLNFGEFPNLKEFDESRTSSDLPVFDLLTIAKATDNFSVINKLGEGGFGAVYKGKLTNGEEIAVKRLAKNSGQGVGEFKNEVNLIAKLQHRNLVRILGYCVKNEEKMLVYEYLPNKSLDSFIFDESKRALLDWKKRFEIICGIARGILYLHQDSRLKIIHRDLKASNILLDADLNPKIADFGMARIFGQDQIQANTNRIVGTYGYMSPEYAMEGLFSVKSDVYSFGILILEMITGKKNTNYDSSHLNLVGHVWELWKLDNVMELVDSSLEESSCGYEIMRCLQIGLLCVQEDPTDRPTMSTVIFMLGNEVGLPSPNKPAFILKRKYNSGDPSTSTEGPNSINDLTISIINAR 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5504421 5508628 - CcPI632755_03g005360.1 Cco03g0536 173895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0536 834 CDD STKc_IRAK 525 788 - -
Cco03g0536 834 SUPERFAMILY Protein kinase-like (PK-like) 497 788 IPR011009 -
Cco03g0536 834 ProSitePatterns Protein kinases ATP-binding region signature. 525 547 IPR017441 GO:0005524(InterPro)
Cco03g0536 834 ProSiteProfiles Bulb-type lectin domain profile. 30 154 IPR001480 -
Cco03g0536 834 Pfam S-locus glycoprotein domain 215 325 IPR000858 GO:0048544(InterPro)
Cco03g0536 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 154 - -
Cco03g0536 834 Pfam PAN-like domain 348 413 IPR003609 -
Cco03g0536 834 SMART ntp_6 349 427 IPR003609 -
Cco03g0536 834 ProSiteProfiles PAN/Apple domain profile. 348 428 IPR003609 -
Cco03g0536 834 Pfam D-mannose binding lectin 79 183 IPR001480 -
Cco03g0536 834 SMART serkin_6 519 787 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0536 834 Gene3D Transferase(Phosphotransferase) domain 1 595 793 - -
Cco03g0536 834 SMART blect_4 36 157 IPR001480 -
Cco03g0536 834 ProSiteProfiles Protein kinase domain profile. 519 802 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0536 834 CDD EGF_CA 294 326 - -
Cco03g0536 834 CDD PAN_AP_plant 347 427 - -
Cco03g0536 834 CDD B_lectin 37 157 IPR001480 -
Cco03g0536 834 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 188 IPR036426 -
Cco03g0536 834 ProSiteProfiles EGF-like domain profile. 290 328 IPR000742 -
Cco03g0536 834 Pfam Protein tyrosine and serine/threonine kinase 521 785 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0536 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 488 594 - -
Cco03g0536 834 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0536 834 PIRSF SRK 2 834 IPR024171 GO:0004674(InterPro)
Cco03g0536 834 Gene3D Laminin 294 342 - -
Cco03g0536 834 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 21 800 - -
Cco03g0536 834 Gene3D Phosphorylase Kinase; domain 1 493 594 - -
Cco03g0536 834 Gene3D - 30 154 IPR036426 -
Cco03g0536 834 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 595 795 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0536 Cco-Chr3:5504421 Cco05g1723 Cco-Chr5:25503525 2.00E-191 dispersed
Cco03g0535 Cco-Chr3:5490912 Cco03g0536 Cco-Chr3:5504421 0.00E+00 tandem
Cco03g0536 Cco-Chr3:5504421 Cco03g0537 Cco-Chr3:5517213 3.20E-173 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86650 PF07714 PK_Tyr_Ser-Thr 1.60E-49 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0536 - - - 0.0