Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0537 ATGACAATGGCGTCACAGTATCATTCTATAATGGTTCCGAAGATTCTGAAGCCATGGGAGAACGGATTTGCTGTCAACGGAGAAGGAAACATCATTCTTCTCAACGAAACAGGTGGAGTCTTATGGTCTTCTCCTTCTCCAGGATCAATGAAACAACCCGTCGCTCAGCTGCTAAACACAGGTAATTTGGTTTTAGGAGAATCTGGGTCTGAGAATTATGTATGGCAGAGTTTTGATTATCCTTCTGATACTCTGTTACCGGGAATGAAACTGGGTTGGGACTCGAAAACCGGTCTGAACCGGAAGTTAACGTCTTGGAAAAGCTCGAACGATCCCTCGTCTGGGGCTTTCACTTACAGTATTGAAACGGATGGGCTTCCCCAATTTGTAATTCGCGAAGGACCCACCATAACTTTTCGAGGCGGCCCATGGTACGGTAATAGATTTAGTGGAAGTGGTGCACTCAGAGATACCGCAATTTATTCCCCAAAGTTCGATTATAACGCTACCGAAGCTTTCTTTTCATATGATGCTGCGGATAATCTCTCTGTAAGACTGGTATTGAACGGGGCTGGGTTTTTTCAACAGTTTTATTGGGTCGATGATGGAAAATATTGGAACCCTTTGTATATAATGCCAGGAGATCGCTGTGACGTCTATGGACTTTGTGGGGATTTTGGAGTTTGTACATTTTCGCTCACAGCAGAATGTGATTGTATGGCTGGGTTTGAACCCAAATCGCCTAACGATTGGGAAAGGTTTAGATGGTCTGATGGTTGTGTTAGAAGGGACAATCGCACCTGTGGAAATGGAGAGGGGTTTAAAAGAATTAGCAGTGTGAAATTGCCAGATTCTTCAGGGAATTTGGTGAATGTTAATACAAGCATTGTTGATTGTGAGGCGGCGTGCTTAAACAACTGCTCTTGCTTGGCTTATGGAATAATGGAGCTTCCAACCGGCGGCTATGGCTGCGTTACCTGGTTTCATAAACTGGTGGATGTTAAATTCGTTCTTGAAAATGGACAAGATCTTTATGTGAGAGTGGCTGCTTCAGAACTTGGCTCGTCCAAGAAGAAGCTTTTGGTTGCAATATGTGTGTCTGTGGCTTCATTTTTAGGCTTCTTGGCCTTTGTCATTTGCTTGATCCTTGGGCGTAGAAGGAAAGTTAAAGGTAATGTGATCTCTCCTGATATCACTGAAGGTCATATTCAATCTCAAGAAAATGAAGTGGAAATGCCAATCTTTGATTTTACAACGATCAAGATTGCGACGAATGGTTTCTCTTTTTCGAATAAGATAGGGGAAGGTGGTTTTGGTCCTGTATACAAGGGAAAGCTTCCTTGTGGACAAGAGATTGCAGTAAAGAGACTGGCTGAGGGCTCTGGCCAAGGGCAAAGTGAGTTCAAAAATGAGGTTTTGTTGATCTCACAACTTCAGCATCGAAATCTTGTCAAGCTTCTTGGTTTCTGCATTCACCAACAAGAAACATTGCTGATCTATGAATATATGCAAAACAAAAGTTTAGACTATTTCCTATTCGATAACAAGAGGCGATGTTTACTGAATTGGCAAAAGAGATTGGACATCATAATTGGGATAGCTCGAGGACTTCTTTATCTTCATAGAGATTCAAGACTGAGAATAATACATAGGGACCTCAAAGTAAGTAATATATTACTAGACAATGAAATGACTCCGAAAATTTCAGACTTTGGTATGGCACGCATGTTTGGGGAAGATCAAAATATGACCAAAACCAAAAGAGTTGTTGGGACCTATGGTTATATGTCTCCAGAATATGCACTCGACGGATGTTTTTCATTGAAATCAGATGTATTTAGCTTTGGGGTAATTCTTTTGGAAATAGTTAGCGGTAAGAAGAACAGAGGCTTCTTCCATACCAATCATCAACTAAATCTTCTCGGACATGCATGGAAGCTTTGGGATGAAGAAAATGCTTTGGAGTTAATGGATGCAGCTTTGGAGGATGAATTCCAACCTTCTCAAGCCCTGCGATGCATTGAAGTAGGGCTTTTGTGTGTTCAACAGAACCCTGATGAAAGGCCGACTATGTGGTCAGTACTTTCAATGTTGGAGAGTGAAAATGTATTGTTGTCTCATCCTAAACAACCTGGATTTTACATGGAAAGAATGTTTTCTAAGAATTTATCGGCCGAAACCTCCACTTCCAATGAAGTGACGGTTACATCGCTACACGGTCGTTAG 2226 41.69 MTMASQYHSIMVPKILKPWENGFAVNGEGNIILLNETGGVLWSSPSPGSMKQPVAQLLNTGNLVLGESGSENYVWQSFDYPSDTLLPGMKLGWDSKTGLNRKLTSWKSSNDPSSGAFTYSIETDGLPQFVIREGPTITFRGGPWYGNRFSGSGALRDTAIYSPKFDYNATEAFFSYDAADNLSVRLVLNGAGFFQQFYWVDDGKYWNPLYIMPGDRCDVYGLCGDFGVCTFSLTAECDCMAGFEPKSPNDWERFRWSDGCVRRDNRTCGNGEGFKRISSVKLPDSSGNLVNVNTSIVDCEAACLNNCSCLAYGIMELPTGGYGCVTWFHKLVDVKFVLENGQDLYVRVAASELGSSKKKLLVAICVSVASFLGFLAFVICLILGRRRKVKGNVISPDITEGHIQSQENEVEMPIFDFTTIKIATNGFSFSNKIGEGGFGPVYKGKLPCGQEIAVKRLAEGSGQGQSEFKNEVLLISQLQHRNLVKLLGFCIHQQETLLIYEYMQNKSLDYFLFDNKRRCLLNWQKRLDIIIGIARGLLYLHRDSRLRIIHRDLKVSNILLDNEMTPKISDFGMARMFGEDQNMTKTKRVVGTYGYMSPEYALDGCFSLKSDVFSFGVILLEIVSGKKNRGFFHTNHQLNLLGHAWKLWDEENALELMDAALEDEFQPSQALRCIEVGLLCVQQNPDERPTMWSVLSMLESENVLLSHPKQPGFYMERMFSKNLSAETSTSNEVTVTSLHGR 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5517213 5520530 - CcPI632755_03g005370.1 Cco03g0537 173896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0537 741 Pfam Protein tyrosine and serine/threonine kinase 428 697 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0537 741 SMART ntp_6 269 348 IPR003609 -
Cco03g0537 741 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 24 713 - -
Cco03g0537 741 CDD PAN_AP_plant 265 349 - -
Cco03g0537 741 PIRSF SRK 15 741 IPR024171 GO:0004674(InterPro)
Cco03g0537 741 ProSiteProfiles Bulb-type lectin domain profile. 1 78 IPR001480 -
Cco03g0537 741 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 394 502 - -
Cco03g0537 741 ProSitePatterns Serine/Threonine protein kinases active-site signature. 548 560 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0537 741 Gene3D Transferase(Phosphotransferase) domain 1 503 709 - -
Cco03g0537 741 SMART serkin_6 427 698 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0537 741 Pfam D-mannose binding lectin 22 107 IPR001480 -
Cco03g0537 741 Pfam PAN-like domain 268 334 IPR003609 -
Cco03g0537 741 CDD STKc_IRAK 433 699 - -
Cco03g0537 741 ProSiteProfiles PAN/Apple domain profile. 268 349 IPR003609 -
Cco03g0537 741 Gene3D Phosphorylase Kinase; domain 1 393 502 - -
Cco03g0537 741 Pfam Domain of unknown function (DUF3403) 700 741 IPR021820 GO:0004674(InterPro)
Cco03g0537 741 SUPERFAMILY Protein kinase-like (PK-like) 410 719 IPR011009 -
Cco03g0537 741 Pfam S-locus glycoprotein domain 139 247 IPR000858 GO:0048544(InterPro)
Cco03g0537 741 ProSiteProfiles Protein kinase domain profile. 427 705 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0537 741 SUPERFAMILY alpha-D-mannose-specific plant lectins 23 112 IPR036426 -
Cco03g0537 741 Gene3D - 17 78 IPR036426 -
Cco03g0537 741 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 503 706 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0537 Cco-Chr3:5517213 Cco03g0539 Cco-Chr3:5531224 0.00E+00 dispersed
Cco03g0536 Cco-Chr3:5504421 Cco03g0537 Cco-Chr3:5517213 3.20E-173 tandem
Cco03g0537 Cco-Chr3:5517213 Cco03g0538 Cco-Chr3:5529735 2.70E-22 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86651 PF07714 PK_Tyr_Ser-Thr 2.50E-50 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0537 - - - 0.0