Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0539 ATGGGAGAACTGATTTACAGAAGAGGAAACATCGTTCTTCTCAACGAAACAGATGGAATTTTATGGTCTTCCACTTCTCCACGATCATCGAAAGAAACAGTAGCTCAGCTGCTAGATACAGGTAATTGGGTCTTAAGAGAATCTGGGTCTGAAGATTATCTATGGCAGAGTTTCGATTACCCCTCCGATACTCTGTTACCTGGGATGAAACTGGGTTGGAACTCCAAAACCGGTCTAAACCGGAAGTTAAGATCGTGGAAAAGCTCAAACGATCCGTCGTTTGGGGACTTCGCTTACAGTGTGGATCTTAGTGGGCTTCCCCAATTGGTAACTCGCAAAGGACCCATCCTAAAGTACCGGGGCGGCCCATGGTACGGTAATAGGTTTAGCGGTAGCGCTCCTCTCAGAGATACCGCAGTTTATTCTCCGAAGTTTGAGTACACAGCCGACGAAGTAACTTATTCAATCGTTGCGACGAGTAGTCTCATTGTAAAACTTGCACTGGACGCGGCTGGAATATTGCATCAAGTTTATTGGGACGATGGTAGAAAAGATTGGTATCCTCTGTATACATTGCCAGGGGATCGCTGCGACGACTATGGACTTTGCGGGAATTTTGGTATTTGTACCTTTTCCCTAACTCCACAATGCAATTGCATGGTTGGGTTTGAACCCAAATCGCCTGATGATTGGAAAAGGTTTAGATGGTCAGATGGCTGCGTTAGAAAGGACAATCAAACCTGTAGGAATGGAGAAGGGTTTAAAAGAATCCCCAGTGTGAAATTGCCAGATTCTTCAGGGTATTTGGTGAATATTAATACAAGCATTCATGACTGCGAGGCGGCGTGCTTGAACAACTGCTCTTGCTTGGCTTATGGAATAATGGAACTTTCTACAGGTGGCTATGGCTGTGTCACTTGGTTTCAGAAATTGATTGATGCTAGATTTGTTCCTGAAAATGGACAGGATATCTATGTGAGAGTGGCGGCGTCTGAATTAGACTCGAGCAACAGGAAGCTTGTAATTGCTGTTAGTGTGTCTGTGGCTTCACTGATAGCCTTCTTGGTTTTAGTGGTTTGTTTCACCCTGTGGCGTAGAAGGAAAGTTAGAGGCGAAATTCAAAGTCCAGAGAATGAAGTTGAGATGCCACTCTATGATTTTACTACGATTGAGATTGCCACAAATAATTTTTCTTTTTCCAATAAGATAGGGGAAGGTGGTTTTGGTCCTGTATACAAGGGAAAGCTTCCATGTGGGCAAGAAATTGCAGTAAAAAGGTTGGCAGAGGGCTCTGGTCAAGGACAGATCGAGTTCAAAAATGAGGTTTTATTGATTTCCCAACTTCAACATCGAAATCTTGTCAAGCTGCTTGGTTTCTGCATTCATCAAGAACAAACATTACTAGTTTATGAATACATGCCAAACAAAAGTCTAGACTACTTTCTCTTTGATGATGAGGGGCGATCTTTACTCAATTGGCAAAAGAGATTGGACATCATAATTGGAATAGCTCGAGGGCTTCTTTATCTTCACAGAGATTCTAGGCTTAGAATCATACATCGGGATCTTAAAGTGAGCAATATATTATTGGATAATGAAATGAATCCAAAAATTTCAGACTTTGGAATGGCACGAATGTTTCCCGAGGACCAAACTATGACAAAAACCCAAAGAGTTGTTGGGACCTTTGGCTATATGTCTCCTGAATATGCACTCGATGGATGTTTTTCATTGAAATCAGACGTTTTTAGCTTTGGAGTTATTCTTTTGGAAATAGTAAGTGGTAAGAAGAACAGAGGCTTCTTCCATACAGATCATCAACTTAATCTTCTTGGACATGCATGGAAGCTTTGGGATGAAGGAAATGCTTTGGAATTAGTGGATGAAACATTGGAGGATCAATTCCAACCTCACGAAGCACTGCAATGCATTCAAGTTGGGCTTTTGTGTGTTCAACAGAATCCAGACGAAAGACCAACTATGTGGTCAGTACTTTCAATGTTAGAGAGTGAAAATATGTTATTATCTCCTCCTCAACAACCTGGATTTTACACCGAACGAATGGTTTCGAAGACGGATAAATCGTCGACTGAGATCTCGTCTTCCAATGAAGTGACCGTTACACTACTACAAGCTCGAGATGGAATTCTATGGTCTTCTACTACTTCAAAATTGGTGAAAGAACCAATCGCTCAACTGCTAGATAATGGTAATTTGGTTTTAAGAGAATTTGGGTCTGAAAATTATTTGTGGGAGAGTTTCAACTATCCTTCTGATACTCTGTTACCGGGTATGAAACTTGGTTGGGACTCGGAAACCGGTCTGAACCGGAAGTTGACGGCATGGAAAAGCTCAAACGATCCGTTGCCTGGGAATTTCATTTATGGAATGGACCAGGGTGGGCTTCCCCAGTTTGAAACTCGCAATGGATCCGTCACAATGTACAGGGGTGGCCCATGGTTCGGTAGTAGGTTTAGTGGAACTTCCCCTTTTAGAGAAACGGCAATTCATTATCCACGGTTCAATTATAGCGCGAACGAAGCATTCTTTTCGTTTGAGTCTGCAAAAAATCTCACTGGAAGATATGCGCTTGACACAGAAGGGTACTTCGGACAATCTTATTGGATAGATGATGGAAATGATTGGTACTCTTTGTATAAATTACAAGGAGACGATTGCGATAAGTACGGACACTGCGGAAATTTTGGTATTTGTACATATTCCGTCATACCTCTCTGCGATTGCATCCATGGGTTTCAACCAAAATCGCCGGATGATTGGGAAAAGCATAGCTGGTCAGGTGGGTGCGTTAGAAGGGACAATCAAACCTGCAAAAATGGAGAAGGGTTTAAAAGAATCAGCAGTGTAAAATTGCCAGATTCGTCAGGGAAGTTGGTGAATGTTAATACGAGCATTCATGACTGCGAAGCTGCGTGCTTGAGTAATTGCTCTTGCTTGGCTTATGCAATAATGGAGCTTTCCACAGGCGGCTATGGCTGCATCATGTGGTTTCAGAAATTGGTGGATATTAGAATCCTTCCTGATAATGGGCAGGATATATATGTGAGATTGGCGGCCTCAGAATTAGATTCGGCTAACAGGAAACTTATAATTGTGCTGAGTGTGTGTATTGCTTCTCTGATAAGCTGCCTGGTTGTAGTTGCTTGCCTTATCTATTGGCGTAGAAGGAGGGTTGAGGGTAATGAGGTTTGGTCTCAAGAGAACGAAGTTGAGATGCCACTCTATGATTTTACCATGATCATAACTGCCACAAATAATTTTTCTTCCTCAAATAAGATTGGTGAAGGTGGTTTCGGTCCCGTATACAAAGGCGTGCTTCCATGTGGACAAGAAATAGCAGTGAAAAGACTGGCAGAGGGTTCAAGCCAAGGGCAAGACGAGCTAAGAAACGAGGTTCTATTGATCTCCAAACTCCAACATCGAAATCTTGTCAAGCTGCTTGGTTTTTGCATTCATCAACAAGAAACGTTGCTGGTCTATGAATATATGCCAAACAAAAGTCTAGACTACTTTCTCTTCGACTTCGGTATGGCGCATATGTTCGCTGAAGACCAAACTATGACACACACCAAAAGAGTTGTTGGGACCTATGGTTATATGTCTCTAGAGTATGTAATCGAAGGATATTTTTCAATGAAATCTGATATCTTCAGTTTTGGAGTCATTCTTTTAGAAATAGTTAGTGGTAAGAAGAATAGAGGCTTCTTCCATCCCGACCATCAACTAAATCTTCTTGGACATGCATGGAAACTTTGGGATGAAGGAAATGCGTTGGAATTAATGGATGAAACATTGAAGGATCAATTCCAAAACTCTGAAGCCCTGCGATGCATTCAAGTTGGCCTTTTGTGTGTTCAAGAGAATCCTGAAGAAAGGCCAGCTATTATCTCTTCCTAA 3918 41.99 MGELIYRRGNIVLLNETDGILWSSTSPRSSKETVAQLLDTGNWVLRESGSEDYLWQSFDYPSDTLLPGMKLGWNSKTGLNRKLRSWKSSNDPSFGDFAYSVDLSGLPQLVTRKGPILKYRGGPWYGNRFSGSAPLRDTAVYSPKFEYTADEVTYSIVATSSLIVKLALDAAGILHQVYWDDGRKDWYPLYTLPGDRCDDYGLCGNFGICTFSLTPQCNCMVGFEPKSPDDWKRFRWSDGCVRKDNQTCRNGEGFKRIPSVKLPDSSGYLVNINTSIHDCEAACLNNCSCLAYGIMELSTGGYGCVTWFQKLIDARFVPENGQDIYVRVAASELDSSNRKLVIAVSVSVASLIAFLVLVVCFTLWRRRKVRGEIQSPENEVEMPLYDFTTIEIATNNFSFSNKIGEGGFGPVYKGKLPCGQEIAVKRLAEGSGQGQIEFKNEVLLISQLQHRNLVKLLGFCIHQEQTLLVYEYMPNKSLDYFLFDDEGRSLLNWQKRLDIIIGIARGLLYLHRDSRLRIIHRDLKVSNILLDNEMNPKISDFGMARMFPEDQTMTKTQRVVGTFGYMSPEYALDGCFSLKSDVFSFGVILLEIVSGKKNRGFFHTDHQLNLLGHAWKLWDEGNALELVDETLEDQFQPHEALQCIQVGLLCVQQNPDERPTMWSVLSMLESENMLLSPPQQPGFYTERMVSKTDKSSTEISSSNEVTVTLLQARDGILWSSTTSKLVKEPIAQLLDNGNLVLREFGSENYLWESFNYPSDTLLPGMKLGWDSETGLNRKLTAWKSSNDPLPGNFIYGMDQGGLPQFETRNGSVTMYRGGPWFGSRFSGTSPFRETAIHYPRFNYSANEAFFSFESAKNLTGRYALDTEGYFGQSYWIDDGNDWYSLYKLQGDDCDKYGHCGNFGICTYSVIPLCDCIHGFQPKSPDDWEKHSWSGGCVRRDNQTCKNGEGFKRISSVKLPDSSGKLVNVNTSIHDCEAACLSNCSCLAYAIMELSTGGYGCIMWFQKLVDIRILPDNGQDIYVRLAASELDSANRKLIIVLSVCIASLISCLVVVACLIYWRRRRVEGNEVWSQENEVEMPLYDFTMIITATNNFSSSNKIGEGGFGPVYKGVLPCGQEIAVKRLAEGSSQGQDELRNEVLLISKLQHRNLVKLLGFCIHQQETLLVYEYMPNKSLDYFLFDFGMAHMFAEDQTMTHTKRVVGTYGYMSLEYVIEGYFSMKSDIFSFGVILLEIVSGKKNRGFFHPDHQLNLLGHAWKLWDEGNALELMDETLKDQFQNSEALRCIQVGLLCVQENPEERPAIISS 1305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5531224 5540109 - CcPI632755_03g005390.1 Cco03g0539 173898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0539 1305 ProSiteProfiles EGF-like domain profile. 889 925 IPR000742 -
Cco03g0539 1305 CDD PAN_AP_plant 941 1025 - -
Cco03g0539 1305 Pfam D-mannose binding lectin 6 87 IPR001480 -
Cco03g0539 1305 Pfam D-mannose binding lectin 694 783 IPR001480 -
Cco03g0539 1305 ProSiteProfiles PAN/Apple domain profile. 944 1025 IPR003609 -
Cco03g0539 1305 Pfam Protein tyrosine and serine/threonine kinase 1181 1301 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0539 1305 Pfam Protein tyrosine and serine/threonine kinase 398 667 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0539 1305 Pfam Protein tyrosine and serine/threonine kinase 1097 1179 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0539 1305 SUPERFAMILY Protein kinase-like (PK-like) 1077 1301 IPR011009 -
Cco03g0539 1305 FunFam Os04g0303100 protein 4 118 - -
Cco03g0539 1305 SUPERFAMILY alpha-D-mannose-specific plant lectins 7 92 IPR036426 -
Cco03g0539 1305 SMART serkin_6 397 668 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0539 1305 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 473 676 - -
Cco03g0539 1305 Gene3D Phosphorylase Kinase; domain 1 362 472 - -
Cco03g0539 1305 Gene3D Phosphorylase Kinase; domain 1 1058 1169 - -
Cco03g0539 1305 ProSiteProfiles PAN/Apple domain profile. 248 329 IPR003609 -
Cco03g0539 1305 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 363 472 - -
Cco03g0539 1305 ProSiteProfiles Protein kinase domain profile. 397 675 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0539 1305 Gene3D - 668 796 - -
Cco03g0539 1305 Pfam Domain of unknown function (DUF3403) 670 713 IPR021820 GO:0004674(InterPro)
Cco03g0539 1305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 518 530 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0539 1305 Gene3D - 4 58 IPR036426 -
Cco03g0539 1305 Pfam S-locus glycoprotein domain 815 923 IPR000858 GO:0048544(InterPro)
Cco03g0539 1305 Pfam S-locus glycoprotein domain 119 227 IPR000858 GO:0048544(InterPro)
Cco03g0539 1305 CDD STKc_IRAK 403 669 - -
Cco03g0539 1305 SUPERFAMILY Protein kinase-like (PK-like) 380 690 IPR011009 -
Cco03g0539 1305 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1060 1169 - -
Cco03g0539 1305 ProSiteProfiles EGF-like domain profile. 193 229 IPR000742 -
Cco03g0539 1305 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 682 - -
Cco03g0539 1305 ProSiteProfiles Bulb-type lectin domain profile. 1 58 IPR001480 -
Cco03g0539 1305 Gene3D Transferase(Phosphotransferase) domain 1 1170 1304 - -
Cco03g0539 1305 ProSiteProfiles Protein kinase domain profile. 1094 1305 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0539 1305 Pfam PAN-like domain 248 313 IPR003609 -
Cco03g0539 1305 Pfam PAN-like domain 944 1010 IPR003609 -
Cco03g0539 1305 CDD PAN_AP_plant 245 329 - -
Cco03g0539 1305 SUPERFAMILY alpha-D-mannose-specific plant lectins 708 788 IPR036426 -
Cco03g0539 1305 Gene3D Transferase(Phosphotransferase) domain 1 475 667 - -
Cco03g0539 1305 FunFam cysteine-rich receptor-like protein kinase 10 1168 1305 - -
Cco03g0539 1305 SMART ntp_6 249 328 IPR003609 -
Cco03g0539 1305 SMART ntp_6 945 1024 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0537 Cco-Chr3:5517213 Cco03g0539 Cco-Chr3:5531224 0.00E+00 dispersed
Cco03g0539 Cco-Chr3:5531224 Cco05g1723 Cco-Chr5:25503525 2.20E-197 dispersed
Cco03g0538 Cco-Chr3:5529735 Cco03g0539 Cco-Chr3:5531224 1.50E-28 tandem
Cco03g0539 Cco-Chr3:5531224 Cco03g0540 Cco-Chr3:5544034 1.80E-167 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86652 PF07714 PK_Tyr_Ser-Thr 8.00E-49 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0539 - - - 0.0