Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0540 ATGATTTTAAAATTCCAAGGTGGTATAAAAGCAAACCTTCAGGATCCAACAGCCTCCCATCCAAGGGTTAATAGGTTCAAACCCTCGAAACCTATGAGACTCTTGAAAAGTGGATCCCTTCGGCTGGCTATTAGAAGCTTAACTCTGATGCATCATAATCGTCCTGGCTTTGTTTGTGAGATTATCAAAATCCTTAACGAAAATAGTTTGAATTTATCTAAGACGTATCGTAACCGGGTGGCGACGGCTTTGGAACGCATAATATTTCGACGCATCGTACTACGACGTTCCCTATCTTCGTCGCATGACAATGCGACGGTTTTTCAAAGCATAATATTTCGACGCACCTCTTTGCGACCTTTCTCGCTTTCTTCGCATCGTATTGCGACGGTTTCTCAACGCATAATATTTTCGATGCATACCATTGCGACCTTTCTCGATTTTGTCGCATCATCACTTCAAGATCCTATTGCTCAATTGCTGGATACAGGTGAAGTTTTTTGGTCTTCAAATTCAACAAGCTCACTTAAAAATCCAATTGCTCAATTGCTAGATACAGGTAATTTCATTCTGAGAGATTCAAATTCACGATCTGACAATCATGTCTGGCAGAGTTTTGATTACCCCTTTGATACTCTGCTACCGGAAATGAAACTGGGTTGGGACTCCAAAACAGGGCTTAACCGGAAGTTAACATCAAGAAAGAATGAAAACGATCCGTCCTCTGGAGAATTTAGTTATGAAGTCAACACAGATGGGCTTGCTGAACTTGTGGTTCGTAAAGCAAACAAGACGATGTTTAGGGGAGGACCATGGTTTGGCGATGGTTTTACCCGACGTCGATCCACCGGAGGGATTTTCATATATAATTCTTCATATGAGGTATCATTTTCATATAATGCTCCAGACGATAACCCATCAAGAGTTGTGTTGGATGCAAGTGGGTCTGTTGAACACTCTATCTGGAGCGAAGAGGAGAAAGGATGGCGCAAAACATACACGTTTGAAGGATCTGGCTGCAACGACTACGATTTATGTGGAAATTTTGGTCTTTGTAGCTCTGTCTTAGTAGCAAGCTGTGGCTGTTTAGATGGGTTTAAACAGAAATCAACCCAAAATTTTTCAGATGGGTGTGTGAGAAAGGATGAAAAAATTTGTAGAGAAGGAGAAGGATTTAGAAAGATAAGTGATGTGAAATGGCCAGATTCCAGTGGGAAGTCAGTGAAATTGAAAATTGGTATTCAAAATTGCGAAACAGAGTGCTTGAATGATTGTCTTTGCTTGGCTTATGGCAAACTGGAAATTCCTAATATTGGGTCTGCCTGTGTCACCTGGTTTAACAAATTGATTGATATTAGATTTGTTCGTGATGTTGGAACTGGAGATGATCTCTTTGTGAGAGTGGCTGCTTCAGAATTAGAATGGAGTGAGAGGAGGAAGAGTATAATAGTTCCGGTGGTTGTGCCAATCGTGTCAGTGATAATCTTCTTGGCTTTAATCACCCTTTTTATCGTTAGGAATGTAAGAAGAAGAGCTAAAGATAATGGAGTTGCAATCACTGAGGATCTAATTCATGAGAATGAACTTGAGATGCCAATTGGGTTAATTGAAGCTGCGACCAACAATTTCTCAATTTCTAATAAGATAGGAGAAGGGGGTTTTGGACCTGTTTATAAGGGCAGACTCCCATGTGGACAAGAAATTGCGGTAAAGAAGCTAGCCGAAAGATCTCGTCAAGGATTGGAGGAGTTTAAAAATGAGGTCCTTTTAATTTCCCAACTTCAACATCGAAATCTTGTCAAACTTCTTGGTTTCTGCATTCACAAGGAAGAAACATTACTTATTTATGAATACATGCCTAACAAAAGTTTGGACTACTTCCTTTTTGACGACGGAAGACGTTGTTTACTCCATTGGCAAATGAGAATTGATATCATAATTGGCATTGCTCGAGGCCTTCTTTATCTTCATCGAGATTCAAGACTTCGAATTATTCATAGAGATCTCAAAGCTGCCAATATTTTATTAGATAGCGAAATGATGCCAAAAATCTCAGACTTTGGCATTGCACGTATTCCCCAATTAATTGTTTCAGCCGCCCAGAAGTTTGAATTGGGTTCTTCACTCAACCCAAAGCCTCGAATTTCAAGTACTTATGAATATGGTTTAAGGGCATTCCCGCCGTAG 2187 40.15 MILKFQGGIKANLQDPTASHPRVNRFKPSKPMRLLKSGSLRLAIRSLTLMHHNRPGFVCEIIKILNENSLNLSKTYRNRVATALERIIFRRIVLRRSLSSSHDNATVFQSIIFRRTSLRPFSLSSHRIATVSQRIIFSMHTIATFLDFVASSLQDPIAQLLDTGEVFWSSNSTSSLKNPIAQLLDTGNFILRDSNSRSDNHVWQSFDYPFDTLLPEMKLGWDSKTGLNRKLTSRKNENDPSSGEFSYEVNTDGLAELVVRKANKTMFRGGPWFGDGFTRRRSTGGIFIYNSSYEVSFSYNAPDDNPSRVVLDASGSVEHSIWSEEEKGWRKTYTFEGSGCNDYDLCGNFGLCSSVLVASCGCLDGFKQKSTQNFSDGCVRKDEKICREGEGFRKISDVKWPDSSGKSVKLKIGIQNCETECLNDCLCLAYGKLEIPNIGSACVTWFNKLIDIRFVRDVGTGDDLFVRVAASELEWSERRKSIIVPVVVPIVSVIIFLALITLFIVRNVRRRAKDNGVAITEDLIHENELEMPIGLIEAATNNFSISNKIGEGGFGPVYKGRLPCGQEIAVKKLAERSRQGLEEFKNEVLLISQLQHRNLVKLLGFCIHKEETLLIYEYMPNKSLDYFLFDDGRRCLLHWQMRIDIIIGIARGLLYLHRDSRLRIIHRDLKAANILLDSEMMPKISDFGIARIPQLIVSAAQKFELGSSLNPKPRISSTYEYGLRAFPP 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5544034 5559071 - CcPI632755_03g005400.1 Cco03g0540 173899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0540 728 ProSiteProfiles Protein kinase domain profile. 543 728 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0540 728 Gene3D Phosphorylase Kinase; domain 1 504 618 - -
Cco03g0540 728 FunFam Os07g0541700 protein 619 702 - -
Cco03g0540 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 664 676 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0540 728 Gene3D Transferase(Phosphotransferase) domain 1 619 709 - -
Cco03g0540 728 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 159 697 - -
Cco03g0540 728 ProSiteProfiles PAN/Apple domain profile. 386 469 IPR003609 -
Cco03g0540 728 Pfam PAN-like domain 386 452 IPR003609 -
Cco03g0540 728 Gene3D - 143 206 IPR036426 -
Cco03g0540 728 SUPERFAMILY Protein kinase-like (PK-like) 531 694 IPR011009 -
Cco03g0540 728 SUPERFAMILY alpha-D-mannose-specific plant lectins 160 240 IPR036426 -
Cco03g0540 728 SMART serkin_6 543 726 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0540 728 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 509 618 - -
Cco03g0540 728 Pfam Protein tyrosine and serine/threonine kinase 545 692 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0540 728 CDD PAN_AP_plant 386 469 - -
Cco03g0540 728 Pfam D-mannose binding lectin 163 235 IPR001480 -
Cco03g0540 728 Pfam S-locus glycoprotein domain 267 369 IPR000858 GO:0048544(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0540 Cco-Chr3:5544034 Cco10g0590 Cco-Chr10:7796754 1.60E-120 dispersed
Cco03g0539 Cco-Chr3:5531224 Cco03g0540 Cco-Chr3:5544034 1.80E-167 tandem
Cco03g0540 Cco-Chr3:5544034 Cco03g0541 Cco-Chr3:5559821 1.60E-99 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86653 PF07714 PK_Tyr_Ser-Thr 1.80E-32 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0540 - - - 0.0