Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0541 ATGAAACCCATCGCCAACACCATTCCATTAATCCTTCTTCTCCTGTGCTTTCTTTTGAAATTTTCCAGCAGCATAGATACGATCACATCTACACAATTCCTCAAAGATCCCGAAGCTGTATTGTCCAATCGTGGCTTCTTCGAATTGGGTTTCTTTAGCCCTCCCAATTCCACCGATCGGTTCGTCGGAATTTGGGATAAACGAGTGCCTGTACGAACTGTTTTCTGGGTAGCTAACAGAGACAAGCCTCTCAACAACAAATCAGGGGTTTTCGCCGTATCCAACGACGGGAATCTCGTAGTATTAGATGAACACAATAAAATTCTTTGGAACTCCAATGTTTCTAACGCTGTAGTGAACTCCACCGCTCGTCTTCTTGATTCTGGAAACCTTGTTCTGCAGGACTCTGTTTCAGGGACCGTCATTTGGGAGAGTTTCAAAGACCCATCAGACAAATTCTTGCCAATGATGAAATTCATCACGAACTCAATCACAAACGAGAAAGTAGAAATCGTGTCGTGGAAAACCCCATCTGATCCATCTTCAGGAAATTTCTCCTTTGGAATCGACCCTCTGACGATCCCCGAAGTTATAATTTGGAAAAACAGCCGCCCGTATTGGAGGTCCGGTCCATGGGACGGCCAAGTTTTCATCGGAATACCCGGTATGAACACTGACTATCTTTCTGGAGGCAATCTCGTAATCGAAAATAAAACTTACTCTCTCTCAATTGCCAATGCAAACGAAGCTCAGTTATTCTACTACTACTTGAACCCCAATGGTAGTTTGGAAGAGAATCGTTGGAATATGGAGGATCAAAAATACGAGATCGCTTGGTCAGCTCCTGAAACAGAGTGTGATGTTTATGGTGCTTGTGGAGCATTTGGGGTTTGTGATTCTCAAAGAACCCCAATTTGCAGTTGTTTGAGGGGTTTTAAGCCAGAGAAGGAAGAAGAATGGAACAGAGGAAATTGGAGAAATGGGTGTGTGAGGAATTCACCATTGGAGTGTGAAAAAAAGAACATCAATGTTGAAATAGGAAAACATGAGGATGGGTTTTTGAAAATGGGAATGGTTAAAGTTCCAGATTCTGCAGCTTGGATTTTAGCTTCGGAAAATGAGTGCAGAGTCCAGTGTTTGTCAAACTGTTCTTGTTCTGCATATGCATATAGAACAGGGATTGGTTGTATGATATGGAGAAGAGAATTAATTGACATTCAACAGTTCAAGAATGATGGAGCAGACATTTATGTTCGTGTGGCATATTCAGAAATAGCTGATGAAAGTGGAATCACCAAAGACATGAAATTAGTCATCATAGCTTCTGTGGTAACAGGAAGCTTCATACTTATCTGCTGCATATATTGCTTATGGAAAAGGAAAAGGAAAAGGCAGATCAAGTTTTTGATGAACACTGGTGGTGATATGAAGCATGATAAAGTGAATGAAGTTAAGCTTCAGGAGCTGCCTCTTTTTGATTTTGAGAAGCTGGCAATTGCAACTAACCACTTCCATTTCAATAACAAGATTGGTCAGGGTGGGTTTGGGCCAGTGTACAAGGGAAAATTGGTAGATGGACAAGAAATAGCAGTAAAGAGACTTTCAAAGACCTCTGGACAAGGGCTTGAAGAGTTTACAAATGAAGTGATGGTGATTTCAAAACTACAACATAGAAATCTTGTGCAGCTTTTTGGTTGTTGTGTGGAGGGAGAAGAAAGAATGTTAGTTTATGAGTACATGCCAAATGGAAGCTTAGATTCAATTATTTTTGATTCAACTAAAGCCAAAGTGTTAGATTGGCGAAAAAGATTTAACGTCATTGAAGGAGTTGCTCGAGGACTTCTTTATCTCCATAGAGATTCGAGACTAAAAATCATTCATAGAGATTTAAAAGCTAGTAACATTTTACTAGATCGAGATTTAAATCCCAAAATTTCAGATTTTGGTACTGCTAGAATTGTTTACGGCAATGAAGCTCAAGCTAATACCACTAGAGTTATTGGTACTTATGGCTATATGTCTCCGGAATACGTGTTGAATGGCCAATTTTCAGAGAAGTCAGATGTGTTTAGCTTTGGAGTTTTGTTGCTTGAAATTATTAGTGGAAGAAAAAATACAAGCTTCTATGATAATGAACACACCTTGAGCCTTCTAGGATTTGCATGGAAATTATGGATGGAGGACAATTCAGTTGCTTTGATTGATCAAACAACGTTTGAATTGTGTTGTCAAGCAGAGATTTTGAGGTACATTCATGTAGGATTATTGTGTGTTCAAGAATTGGCAAAGGATAGACCAAATATGACGACAATTCTTTCGATGTTTCATAATGAGATCACAGATCTTCCAATACCGAAGCAACCTGGATTTAGTAGTAGGCAAATTGAGATTCATACTGAGGCATTCCAACAAAATCATGTTGGAGCTTGCTCGCCAAACATGATCACGCTTACCTCATTTGATGGTCGATAG 2472 39.68 MKPIANTIPLILLLLCFLLKFSSSIDTITSTQFLKDPEAVLSNRGFFELGFFSPPNSTDRFVGIWDKRVPVRTVFWVANRDKPLNNKSGVFAVSNDGNLVVLDEHNKILWNSNVSNAVVNSTARLLDSGNLVLQDSVSGTVIWESFKDPSDKFLPMMKFITNSITNEKVEIVSWKTPSDPSSGNFSFGIDPLTIPEVIIWKNSRPYWRSGPWDGQVFIGIPGMNTDYLSGGNLVIENKTYSLSIANANEAQLFYYYLNPNGSLEENRWNMEDQKYEIAWSAPETECDVYGACGAFGVCDSQRTPICSCLRGFKPEKEEEWNRGNWRNGCVRNSPLECEKKNINVEIGKHEDGFLKMGMVKVPDSAAWILASENECRVQCLSNCSCSAYAYRTGIGCMIWRRELIDIQQFKNDGADIYVRVAYSEIADESGITKDMKLVIIASVVTGSFILICCIYCLWKRKRKRQIKFLMNTGGDMKHDKVNEVKLQELPLFDFEKLAIATNHFHFNNKIGQGGFGPVYKGKLVDGQEIAVKRLSKTSGQGLEEFTNEVMVISKLQHRNLVQLFGCCVEGEERMLVYEYMPNGSLDSIIFDSTKAKVLDWRKRFNVIEGVARGLLYLHRDSRLKIIHRDLKASNILLDRDLNPKISDFGTARIVYGNEAQANTTRVIGTYGYMSPEYVLNGQFSEKSDVFSFGVLLLEIISGRKNTSFYDNEHTLSLLGFAWKLWMEDNSVALIDQTTFELCCQAEILRYIHVGLLCVQELAKDRPNMTTILSMFHNEITDLPIPKQPGFSSRQIEIHTEAFQQNHVGACSPNMITLTSFDGR 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5559821 5562857 - CcPI632755_03g005410.1 Cco03g0541 173900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0541 823 PIRSF SRK 2 823 IPR024171 GO:0004674(InterPro)
Cco03g0541 823 CDD STKc_IRAK 510 775 - -
Cco03g0541 823 CDD B_lectin 31 149 IPR001480 -
Cco03g0541 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 580 783 - -
Cco03g0541 823 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 790 - -
Cco03g0541 823 Pfam Protein tyrosine and serine/threonine kinase 505 722 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0541 823 SMART blect_4 31 149 IPR001480 -
Cco03g0541 823 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 213 IPR036426 -
Cco03g0541 823 Pfam PAN-like domain 348 406 IPR003609 -
Cco03g0541 823 CDD PAN_AP_plant 334 421 - -
Cco03g0541 823 Gene3D Transferase(Phosphotransferase) domain 1 580 782 - -
Cco03g0541 823 Gene3D Phosphorylase Kinase; domain 1 477 579 - -
Cco03g0541 823 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Cco03g0541 823 FunFam receptor-like serine/threonine-protein kinase SD1-8 476 579 - -
Cco03g0541 823 ProSiteProfiles Protein kinase domain profile. 504 779 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0541 823 Pfam S-locus glycoprotein domain 207 315 IPR000858 GO:0048544(InterPro)
Cco03g0541 823 SUPERFAMILY Protein kinase-like (PK-like) 489 799 IPR011009 -
Cco03g0541 823 Pfam D-mannose binding lectin 73 175 IPR001480 -
Cco03g0541 823 ProSiteProfiles PAN/Apple domain profile. 337 421 IPR003609 -
Cco03g0541 823 Gene3D - 21 146 IPR036426 -
Cco03g0541 823 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0541 823 SMART serkin_6 504 775 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0541 823 SMART ntp_6 348 420 IPR003609 -
Cco03g0541 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0541 Cco-Chr3:5559821 Cco04g2026 Cco-Chr4:34328358 3.40E-199 dispersed
Cco03g0545 Cco-Chr3:5607808 Cco03g0541 Cco-Chr3:5559821 3.50E-31 dispersed
Cco03g0540 Cco-Chr3:5544034 Cco03g0541 Cco-Chr3:5559821 1.60E-99 tandem
Cco03g0541 Cco-Chr3:5559821 Cco03g0542 Cco-Chr3:5567545 3.40E-268 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86654 PF07714 PK_Tyr_Ser-Thr 2.00E-49 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0541 - - - 0.0