Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0542 ATGAAACCCCAAAAAGGGACTAACTTCTTTCATCTTCATCTTCATCTTTTGCTTTTCTGCTTCTGTTTAAGATTCTGCATCGCTAGAAATATCATCACATCAACGAACTTCATCACAGACCCTTCAACTCTGTTATCTGCAAGCAGTTTCTTCGAGTTGGGATTTTTTAGCCCTGTTAATACAACGAGCCGATATGTCGGAATATGGCTCAATCAAGGTTCTAAGCTCACCGTCGTATGGGTAGCTAACAGAGACAACCCTCTAAACCATACTTCTGGGGTTTTCACTATTTCCAAGGATGGAAATCTCGTTGTATTAGACGGAAAGAGTAACATTCTTTGGACTTCGAACATTCTAAACCCTACGATTAACTCGACTGCTCTGCTTTTAGATTCTGGTAATCTTATTTTACAAGACTCTGTTTCTGGGATGATTCTATGGGAGAGTTTCAAACATCCCTCTGATACATTCTTCCCAGCCATGAAAATTTTCACAAACACAAGAACTAAAGAGAAAATAGGGTTGACATCGTGGGAAAGCCCTTCTAATCCATCGAAAGGGCGTTTCTTCTTCGGCATCGATGTTCTGAATAACATTGCTGAAGTTTACATTTGGGAAGGCAGTGATCTGCGTTGGAGATCTGGTCCATGGAATGGCCAATCCTTCATTGGCATACCCCAGATGGATTCTGTTTATTATCTCCTTGGTTTCAGTCTCCTAATTGAAAACCAAACTTACTATCTCTCTGGTCCAAATAGAAATGAGCTGCTCAATTATGAGTTTTATCAGTTAACCTCACAGGGGAATTTTGAGCAATCGCATTGGGATGATACATTGAAGGACTGGAAACCTAGATGGTCAGCTCTAAAAACTCCGTGTGATTTCTATGGAACTTGTGGGGCGTTTGGAATCTGTGATCCAAAATCATTCCCTGTTTGCAGTTGTTTAAAAGGGTTTCAGCCAAAGAATGAGGAGGAGTGGAATCAAGGAAATTGGGGAAGTGGGTGTTTGAGAAAGACATCATTGAAGTGTGAGAAAGTGAAAACCGTGAGTGTTGAACATGGCAAGGAAGATGGATTTTTGAAAGTGGGAACAGTTAATTTACCACATTTTGCAGAGTCGTTGAATTCCTCTGTTTCAGCAGAGGATTGCGGGGTTAAGTGCTCGGATGATTGTTCATGTTCTGCTTATGCTTATGAAAGTGGCATTGGCTGCATGCTATGGAGTGGGGATTTGATCGACGCTCGAAAGCTCGATTTTGAGAATGCTACAAAAAGGTCGAAAGTGATCGTAATAGCTTCAGTGATAGCTGGAAGTGGATCACTAATCATCTTCTTCATCATATTCGTCTCATGGAGAAGGATAATTGGCCAAAAAGCAAAGGAAGAGATCAGAAAAGGCAAGAAGACGATATTGTTAAAGGAGAGGAGGAAATTTTTGAACTTGGTGATGGATCACAGAATGGGAATCAATATGAATCAAGAATTACCAACTTATGACTTTGAGAAGCTGGCAATTGCAACAAACAATTTTCATTTAGATAACAAGCTTGGAAAGGGAGGATTTGGGCCAGTGTATAAGGGAAGATTGCTAGATGGACAAGAAATAGCAATAAAAAGGCTTTCAAGAGCTTCTAAACAAGGGTATGAAGAATTTATAAATGAAGTGATTGTGATTTCTAAACTACAGCATAGAAATCTTGTTCAGCTTCTCGGTTGTTGCATTGAAGGAGAAGAGAAGATGCTAATATATGAGTATATGCCCAACCTAAGTCTGGATGCATTCATTTTTGACTCTACCAAACAAAAACTCTTGGATTGGAGAAAACGATTTAACATCGTTGATGGAATTGCTCGAGGTCTCCTTTACCTCCATAGAGATTCAAGATTGAGAATTATTCATAGGGATTTGAAGGCAAGTAATATTTTATTAGACAAAGATATGAACCCTAAAATTTCAGACTTTGGTATGGCAAGAATTTTTGGCAATAATGAAGTGGAAGCCAATACTATAAGGGTTGTTGGAACTTATGGATATATGTCGCCTGAGTATGCAATGCAAGGTCAATTTTCAGAGAAATCAGATGTTTTTAGTTTTGGAGTTTTATTACTTGAAATTATAAGTGGAAAAAGGAATACAGGATTCAATCGCCATGAACATGCTTTAAGCTTATTGGAATTTGCATGGAAGTTGTGGATAGAAGACAATCTTATTGCTTTGATCGATCCCACAATGCATGAGTTGTGTTATCAATCAGAAATTTTGCGGTGCATCCAAGTAGGACTCTTATGTGTTGAAGAATCTATAAATGATAGACCAAATGTTCTTGCCATTATTTCAATGCTGAACAGTGAAATTGTAGATCTTCCTATTCCAAAGCAGCCTAGCTTTATTGGTAGACCAACTCAAAATGCATTCAATCCCATTCCCCCATACAATTCTGTAGCTTTTATTACTTTCTGTGAACTTACCAGCATTTTAATGAAGCAATGGTGA 2496 38.5 MKPQKGTNFFHLHLHLLLFCFCLRFCIARNIITSTNFITDPSTLLSASSFFELGFFSPVNTTSRYVGIWLNQGSKLTVVWVANRDNPLNHTSGVFTISKDGNLVVLDGKSNILWTSNILNPTINSTALLLDSGNLILQDSVSGMILWESFKHPSDTFFPAMKIFTNTRTKEKIGLTSWESPSNPSKGRFFFGIDVLNNIAEVYIWEGSDLRWRSGPWNGQSFIGIPQMDSVYYLLGFSLLIENQTYYLSGPNRNELLNYEFYQLTSQGNFEQSHWDDTLKDWKPRWSALKTPCDFYGTCGAFGICDPKSFPVCSCLKGFQPKNEEEWNQGNWGSGCLRKTSLKCEKVKTVSVEHGKEDGFLKVGTVNLPHFAESLNSSVSAEDCGVKCSDDCSCSAYAYESGIGCMLWSGDLIDARKLDFENATKRSKVIVIASVIAGSGSLIIFFIIFVSWRRIIGQKAKEEIRKGKKTILLKERRKFLNLVMDHRMGINMNQELPTYDFEKLAIATNNFHLDNKLGKGGFGPVYKGRLLDGQEIAIKRLSRASKQGYEEFINEVIVISKLQHRNLVQLLGCCIEGEEKMLIYEYMPNLSLDAFIFDSTKQKLLDWRKRFNIVDGIARGLLYLHRDSRLRIIHRDLKASNILLDKDMNPKISDFGMARIFGNNEVEANTIRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIISGKRNTGFNRHEHALSLLEFAWKLWIEDNLIALIDPTMHELCYQSEILRCIQVGLLCVEESINDRPNVLAIISMLNSEIVDLPIPKQPSFIGRPTQNAFNPIPPYNSVAFITFCELTSILMKQW 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5567545 5577978 + CcPI632755_03g005420.1 Cco03g0542 173901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0542 831 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 587 790 - -
Cco03g0542 831 PIRSF SRK 3 814 IPR024171 GO:0004674(InterPro)
Cco03g0542 831 ProSiteProfiles Bulb-type lectin domain profile. 29 150 IPR001480 -
Cco03g0542 831 Gene3D - 26 151 IPR036426 -
Cco03g0542 831 Pfam PAN-like domain 356 414 IPR003609 -
Cco03g0542 831 Pfam Protein tyrosine and serine/threonine kinase 512 729 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0542 831 FunFam receptor-like serine/threonine-protein kinase SD1-8 485 586 - -
Cco03g0542 831 Pfam D-mannose binding lectin 77 178 IPR001480 -
Cco03g0542 831 Pfam S-locus glycoprotein domain 212 323 IPR000858 GO:0048544(InterPro)
Cco03g0542 831 CDD B_lectin 35 153 IPR001480 -
Cco03g0542 831 Gene3D Phosphorylase Kinase; domain 1 485 586 - -
Cco03g0542 831 SMART blect_4 35 153 IPR001480 -
Cco03g0542 831 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 795 - -
Cco03g0542 831 SMART serkin_6 511 787 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0542 831 CDD PAN_AP_plant 355 424 - -
Cco03g0542 831 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 184 IPR036426 -
Cco03g0542 831 SUPERFAMILY Protein kinase-like (PK-like) 494 806 IPR011009 -
Cco03g0542 831 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 150 - -
Cco03g0542 831 ProSiteProfiles Protein kinase domain profile. 511 787 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0542 831 CDD STKc_IRAK 517 783 - -
Cco03g0542 831 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0542 831 SMART ntp_6 355 431 IPR003609 -
Cco03g0542 831 Gene3D Transferase(Phosphotransferase) domain 1 587 788 - -
Cco03g0542 831 ProSiteProfiles PAN/Apple domain profile. 344 431 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0542 Cco-Chr3:5567545 Cco04g2026 Cco-Chr4:34328358 1.70E-195 dispersed
Cco03g0541 Cco-Chr3:5559821 Cco03g0542 Cco-Chr3:5567545 3.40E-268 tandem
Cco03g0542 Cco-Chr3:5567545 Cco03g0543 Cco-Chr3:5585248 2.00E-151 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86655 PF07714 PK_Tyr_Ser-Thr 1.30E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0542 - - - 0.0