Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0556 ATGCCAACGCACGCCTTCTTTAGCAGAGTTTCCAGACTCTTCCACGACCATCCTTCCCTTTCCAGGCTCCTTGTTCTTGTCACCGTTAGTGGGGGGAGCCTTGTAGCATACGCTGATGCTAGCCCAACCAATGGTGTACCCAGTATTGCATCTAAAGCCAATGGGGATGAGAAGAAGAAGAAGGTGGTAGTGCTTGGAACTGGTTGGGCGGGAACAAGTTTCTTGAAGAATATTAAAGATCCCTCCTATGAGGTTCAAGTGATATCACCTCGTAATTATTTTGCGTTCACCCCATTGTTGCCAAGTGTTACATGTGGTACAGTGGAAGCCCGTAGCATTGTTGAACCGATTCGCAACATCGTGAGGAAGAAAAGGGTAGACATTAGATTCAATGAAGCAGAGTGCTACAAGATTGATGCTGAAAATAGAAAACTCTATTGCCGATCTAACGAAAACAACAATCTGAATGGGAAAAAGGAATTTGTTGTGGACTATGACTACCTAGTGATAGCTGTGGGAGCTCAAGTTAATACATTCAATACCCCTGGCGTTGTGGAGAATTGCCATTTCTTGAAGGAAGTGGAAGATGCTCAGAGAATACGAAGAACTGTAATTGATTGCTTTGAGAGGGCAAGCCTGCCTACCTTGGACGAAGAAGATAGAAAGAAAATTCTTCATTTTGCTGTTGTTGGTGGTGGCCCCACTGGTGTGGAATTTGCGGCAGAACTTCACGATTTTGTTAATGAGGACTTGGTCAAATTATATCCTGGACTGCAAGATTTTGTAAAAATTACTCTTCTTGAGGCAGGAGATCATATCTTGAACATGTTTGACAAAAGAATTACTACTTTTGCTGAAGAAAAATTCCGTAGAGATGGTATTGATGTTAAGACAGGATCAATGGTAATCAAGGTAACTGATAAAGAGATTTCTACCAAGGAAATGAAGAATGGAGAAATATCTTCTATGCCTTATGGAATGACTGTATGGTCAACTGGTATAGGAACCCGTCCGATCATAAAGGACTTTATGACACAGATTGGTCAGGCTAACAGGCGTGCCTTGGCAACGGATGAATGGCTTCGAGTTGAGGGATGTGACAATGTATATGCACTTGGTGACTGTGCTACTATAAATCAGCGAAGAGTCATGGAGGATATTTCAGCAATTTTTAGCAAGGCAGACAAAGACAATTCTGGGACACTTACAGTTAAAGAATTTCAAGAAGTCATTGATGACATATGTGAAAGATATCCCCAGGTGGAGCTATATTTGAAGAATAAGCAGATGCACAACATTGTTGATCTTTTAAAAGGATCCAAAGAGGATGTGGCGAAGGAGTCTATCGAATTAGACATTGAAGAGTTCAAATCAGCTCTTTCCCAAGTTGATTCTCAAATGAAAAACCTTCCTGCTACAGCACAGGTGGCTGCGCAGCAAGGTGCATATCTTGCCCATTGTTTTAATCGTATGGACGAGTGTGAAAAAGATCCTGAAGGTCCGCTTAGGTTTAGGGGATCAGGGCGCCACCGCTTTCGGCCCTTTAGGTACAAACATCTTGGACAATTTGCACCTTTGGGAGGAGAACAAACGGCTGCACAACTTCCTGGGGATTGGGTGTCCATTGGCCACAGCTCTCAGTGGCTCTGGTACTCTGTCTATGCAAGTAAGCAAGTTAGTTGGCGCACAAGAGCACTGGTGATTACGGATTGGACGAGGCGTTTTGTTTTCGGGAGGGATTCGAGCCGCATATGA 1755 43.42 MPTHAFFSRVSRLFHDHPSLSRLLVLVTVSGGSLVAYADASPTNGVPSIASKANGDEKKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIVRKKRVDIRFNEAECYKIDAENRKLYCRSNENNNLNGKKEFVVDYDYLVIAVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLDEEDRKKILHFAVVGGGPTGVEFAAELHDFVNEDLVKLYPGLQDFVKITLLEAGDHILNMFDKRITTFAEEKFRRDGIDVKTGSMVIKVTDKEISTKEMKNGEISSMPYGMTVWSTGIGTRPIIKDFMTQIGQANRRALATDEWLRVEGCDNVYALGDCATINQRRVMEDISAIFSKADKDNSGTLTVKEFQEVIDDICERYPQVELYLKNKQMHNIVDLLKGSKEDVAKESIELDIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLAHCFNRMDECEKDPEGPLRFRGSGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVITDWTRRFVFGRDSSRI 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5696472 5701545 - CcPI632755_03g005560.1 Cco03g0556 173915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0556 584 Pfam NDH2 C-terminal domain 519 580 IPR054585 -
Cco03g0556 584 SUPERFAMILY FAD/NAD(P)-binding domain 217 379 IPR036188 -
Cco03g0556 584 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509(InterPro)
Cco03g0556 584 SUPERFAMILY FAD/NAD(P)-binding domain 59 278 IPR036188 -
Cco03g0556 584 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
Cco03g0556 584 Pfam Pyridine nucleotide-disulphide oxidoreductase 60 383 IPR023753 GO:0016491(InterPro)
Cco03g0556 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 428 583 - -
Cco03g0556 584 SUPERFAMILY EF-hand 375 470 IPR011992 -
Cco03g0556 584 SMART efh_1 386 414 IPR002048 GO:0005509(InterPro)
Cco03g0556 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 50 411 - -
Cco03g0556 584 PANTHER NADH DEHYDROGENASE 52 584 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Cco03g0556 584 Gene3D - 50 414 - -
Cco03g0556 584 Gene3D - 426 583 - -
Cco03g0556 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 226 244 - -
Cco03g0556 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 62 81 - -
Cco03g0556 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 165 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1852 Cco-Chr2:31421082 Cco03g0556 Cco-Chr3:5696472 6.80E-263 dispersed
Cco02g2084 Cco-Chr2:33745574 Cco03g0556 Cco-Chr3:5696472 1.10E-70 dispersed
Cco03g0556 Cco-Chr3:5696472 Cco05g2457 Cco-Chr5:33009601 3.30E-07 dispersed
Cco02g0137 Cco-Chr2:1433958 Cco03g0556 Cco-Chr3:5696472 2.40E-236 wgd
Cco03g0556 Cco-Chr3:5696472 Cco04g2048 Cco-Chr4:34492531 2.10E-62 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0556 K03885 - csv:101204145 1137.48