Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0605 ATGGATTTTTACTTACTGGTCGAATGGGGTTGTATTGATTTTCCTTCTGCAGGAGAAGTTTACAGAATTACGGCCCCAAGTATGAGTTGCATCTGCTTCGGTTCCTCTACTGTGGAGAAGAAACGAATCTCTACACGTGCTGATAAGGAATTGGACATTGACTTGCTTGAGAATGTAAAACAAATCTCCTTCAATGAATTAAGATCTGCTTCGGACGATTTCCATTCAAACAATAGAATTGGACGGGGAGGTTTTGGAACTGTTTACAAGGGCACATTAAGGAATGGAGTACAAGTTGCAATAAAGAAGCTCTCCATAGAGTCTAAGCAAGGTGCTCACGAATTTTTGACAGAGATCAAAACCATTTCAAATGTTAGGCATCCAAACCTTGTCGAGTTGATTGGATGCTGTTCTCAAAAAGCTAACCGGATCTTGGTATATGAGTATCTGGAGAATAATAGTCTCGACCATGCTTTGTTAGATCCTAAGAAAACAAGCGTGAACCTAGATTGGGGGAAGAGGTCCTCTATTTGCATTGGTACTGCGAGGGGTCTTCAATTTCTTCACGAGGAAGCTGTTCCACGTATTGTGCATAGAGACATCAAGGCTAGTAATATACTCCTTGATGGGGACTTCAATCCGAAAATTGGTGACTTTGGATTAGCCAAACTTTTCCCAGATGATATCACTCACATTAGCACAAGAATTGCAGGAACAACCGGTTATTTGGCTCCAGAGTATGCATTGGGAGGTCAGCTAACTCCAAAGGCTGATGTATATAGCTTTGGAGTCCTCATCCTTGAAATAGTTAGTGGTAGACGTAGCAGTACAGTTTTTGGGAGAGAAATATCAATACTCTTGCTGGAAAGGGTGTGGGAGCTATATGAAGAAGGAAAACTCTTAGAAATAGTTGATCCTAGACTAGAAGATTATCCTCAGGAAGAAGTGCTTAGGTACATGAAAGTGGCTCTTTTTTGCACACAAGCGGCTGCAAATCGGCGGCCAGCAATGAGCCAAGTCGTTGACATGCTTACAAAGAATATCAAGCTTAACGAGAAGCTACTTACCGCCCCGGGGTTCTATGGAGGCATGGGGCTTAGTGACATTCCTTCAGTGAGCAAGAAGACCTCGAACACTTCCACTAGCAATGAGATGAGCTCCGCCGTTGTCTCCATAACTCAAATCACCCCCAGATGA 1197 42.86 MDFYLLVEWGCIDFPSAGEVYRITAPSMSCICFGSSTVEKKRISTRADKELDIDLLENVKQISFNELRSASDDFHSNNRIGRGGFGTVYKGTLRNGVQVAIKKLSIESKQGAHEFLTEIKTISNVRHPNLVELIGCCSQKANRILVYEYLENNSLDHALLDPKKTSVNLDWGKRSSICIGTARGLQFLHEEAVPRIVHRDIKASNILLDGDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTPKADVYSFGVLILEIVSGRRSSTVFGREISILLLERVWELYEEGKLLEIVDPRLEDYPQEEVLRYMKVALFCTQAAANRRPAMSQVVDMLTKNIKLNEKLLTAPGFYGGMGLSDIPSVSKKTSNTSTSNEMSSAVVSITQITPR 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6168150 6177382 - CcPI632755_03g006050.1 Cco03g0605 173964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0605 398 FunFam cold-responsive protein kinase 1 45 149 - -
Cco03g0605 398 Gene3D Transferase(Phosphotransferase) domain 1 150 356 - -
Cco03g0605 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0605 398 Gene3D Phosphorylase Kinase; domain 1 41 149 - -
Cco03g0605 398 SMART serkin_6 74 360 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0605 398 Pfam Protein tyrosine and serine/threonine kinase 76 344 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0605 398 SUPERFAMILY Protein kinase-like (PK-like) 56 344 IPR011009 -
Cco03g0605 398 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524(InterPro)
Cco03g0605 398 CDD STKc_IRAK 80 346 - -
Cco03g0605 398 FunFam Putative LRR receptor-like serine/threonine-protein kinase 150 356 - -
Cco03g0605 398 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 45 383 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cco03g0605 398 ProSiteProfiles Protein kinase domain profile. 74 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0605 Cco-Chr3:6168150 Cco07g1143 Cco-Chr7:25145907 3.90E-92 dispersed
Cco03g0605 Cco-Chr3:6168150 Cco10g2184 Cco-Chr10:34958252 4.70E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86658 PF00069 Pkinase 2.80E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0605 - - - 0.0