Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0625 ATGGATGAAGATGCTAATTCTTGGTTAAGAAGAACCAAGTTTTCTCACACAATATGTTATCGTTTAGAGTCCTTACGATTGGCTTCCTTTCCTGTGGTCACTCAGCCACCACTCAAATCAGTCGCACAATCAAGATCAACCCTTCCTAATAACCTAACCAAGCAGAGGTCTTTATCTCCTCCTCCACAAACTACACTCTCCGGCGCATTTAAGGATGCACGTACCGATCAAAAACGATTTTCAACTCCACAGCCTCAGAGGAAAGAACCTGTAAAAGAAAAGGGTAAAAGGCTATTTAGTAAAAAAGCTAAGGTGCAAAATTCCCTGAAGGAAGAGAAGTTAAAAGGACCTTTGAGGCATCTTATATCTTTTAAAGGCAATGATAAGTTCAAATTCAAGGAATCTTCTTGGACTAAGTTTGGCGGAGGGAAGGTCACTGCTGTTGAAGCTGAAGACGAATCGTCTATTGACCTGTCTAAGTTGATGTTTGGACATAGATTTGCTTTTGGAGCTCATAGTCGGCTATACCATGGAATTTATGAAGATAAAGTTGTTGCTGCTAAGATGATCAATCTACCAGTCAATGACGAAAATGGCGATCTCGCAGCTCGCTTAATAAAGCAATTTGGTAGGGAAGTAACCCTTTTGTCTCGTCTCCATCATCGCAATGTTATAAAGTTAGTAGCAGCAGTGAAAAAGCCACCCGTTTATTGCATCATCACTGAGTATCTACCTCAGGGTTCCTTGAGGGCATATCTTCACAAACTTGAAAAAAAATCTCTCCCATTGCAAAAACAGATTGCCATTGCCTTAGACATTGCTCGTGGGATGGAATACATTCACTCGCAAGGCGTCATTCATCGGGATCTCAAACCTGAGAACATTCTTATTGATCAAGACTTTTGTCTAAAGATTGCCGATTTCGGCATTGCTTGTGAGGAGGCACATTGTGATACACTGGCCGAGGACCCCGGAACTTTTCGTTGGATGGCCCTCGAGATGATCAAACGTAAACCTTACGGGAGAAAGGTGGATATCTACAGCTTCGGACTTCTCCTATGGGAATTGGTAGCTGGAAAAATCCCTTATGAGGATATGACTCCAATCCAAGCAGCTTTTGCAGTTGTAGATAAGAATATTAGACCGGTCATCCCGGGGGAGTGTCCTCCAGTGATGCAGATGTTAATCGAGCAATGTTGGTGCGAGAAACCGGAGAAGAGGCCGGAGTTTTGGCAGGTGGTGAAAGTGTTAAAGCAACTTGAGAGTTGTGTTGGGGAAGATGGTACATTGATGACGAATGTAGAGGTCAAACAACCAACCCGTCAGATCCGCCGCCGACTACCCGATTCGCCTTCGCCGGTTTTCATTCGCAGACCTGACCAGTTTTCGTTCGCTGGTTTTTCGTTCAAATCTGACCGAAGAACCCAGCTTTTGCCATCTCCGGTCATAGATCCACCGGCTCCATTCGATCTGCTGCATTGCCGTTCATCGTGTTCGTCAGTTTTTCGTCTGAAACTCCGTCTAACCTTCCGTTGCTTCTGTCGGCGAACCATGCACAACTTGGTTCCTTCAGCAACCTTTCGTGCATTCACCCGATCCATTCCACCCAGATCCATCGTTTTCGTAGGCAACTCCGTTCAATCTGTCAGCATCCCGTTGTTTCTGTCGGCAACCCACGCACAGATCCATCAGATCCATTCCGCCCAGATCCTCTGTTCTCCGTTGCTTCTCCGTCCAAGATCTGTTCCCGTCGCTTCTCCTACTCGCAAACCGTTGCCCCAGATTCGTCTGGTCACACACGCTCGCTCCAGATCCGATTCGCACAAACTGTCCGGTTGTCTCTATCGCTCAAAACTAGTCACCAGCCGTCGTTCTGCTTCTCAGTCCAGATCC 1893 46.06 MDEDANSWLRRTKFSHTICYRLESLRLASFPVVTQPPLKSVAQSRSTLPNNLTKQRSLSPPPQTTLSGAFKDARTDQKRFSTPQPQRKEPVKEKGKRLFSKKAKVQNSLKEEKLKGPLRHLISFKGNDKFKFKESSWTKFGGGKVTAVEAEDESSIDLSKLMFGHRFAFGAHSRLYHGIYEDKVVAAKMINLPVNDENGDLAARLIKQFGREVTLLSRLHHRNVIKLVAAVKKPPVYCIITEYLPQGSLRAYLHKLEKKSLPLQKQIAIALDIARGMEYIHSQGVIHRDLKPENILIDQDFCLKIADFGIACEEAHCDTLAEDPGTFRWMALEMIKRKPYGRKVDIYSFGLLLWELVAGKIPYEDMTPIQAAFAVVDKNIRPVIPGECPPVMQMLIEQCWCEKPEKRPEFWQVVKVLKQLESCVGEDGTLMTNVEVKQPTRQIRRRLPDSPSPVFIRRPDQFSFAGFSFKSDRRTQLLPSPVIDPPAPFDLLHCRSSCSSVFRLKLRLTFRCFCRRTMHNLVPSATFRAFTRSIPPRSIVFVGNSVQSVSIPLFLSATHAQIHQIHSAQILCSPLLLRPRSVPVASPTRKPLPQIRLVTHARSRSDSHKLSGCLYRSKLVTSRRSASQSRS 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6398301 6405319 - CcPI632755_03g006250.1 Cco03g0625 173984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0625 631 MobiDBLite consensus disorder prediction 39 100 - -
Cco03g0625 631 SUPERFAMILY Protein kinase-like (PK-like) 153 417 IPR011009 -
Cco03g0625 631 SMART serkin_6 161 424 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0625 631 Gene3D Transferase(Phosphotransferase) domain 1 245 447 - -
Cco03g0625 631 ProSiteProfiles Protein kinase domain profile. 161 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0625 631 FunFam serine/threonine-protein kinase HT1 246 438 - -
Cco03g0625 631 Pfam Protein tyrosine and serine/threonine kinase 166 417 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0625 631 MobiDBLite consensus disorder prediction 72 96 - -
Cco03g0625 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0625 631 MobiDBLite consensus disorder prediction 39 71 - -
Cco03g0625 631 PANTHER SERINE-THREONINE PROTEIN KINASE 59 420 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco03g0625 631 Gene3D Phosphorylase Kinase; domain 1 150 244 - -
Cco03g0625 631 CDD STKc_MAP3K-like 168 417 - -
Cco03g0625 631 PRINTS Tyrosine kinase catalytic domain signature 279 297 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0625 631 PRINTS Tyrosine kinase catalytic domain signature 388 410 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0625 631 PRINTS Tyrosine kinase catalytic domain signature 344 366 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0625 631 PRINTS Tyrosine kinase catalytic domain signature 241 254 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0625 Cco-Chr3:6398301 Cco04g1941 Cco-Chr4:33738205 5.90E-87 dispersed
Cco03g0625 Cco-Chr3:6398301 Cco04g2089 Cco-Chr4:34819877 8.70E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86660 PF07714 PK_Tyr_Ser-Thr 2.80E-58 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0625 - - - 0.0