Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0651 ATGCTTCTCCACCCACTCTTACTCTTCTTCTTCTTCTTCTTCTTCATCTTCCTCTCAAACCCTTCTCTTCTCTCCTTCTCTCTAACCCAAGAAGGGCTCTATCTCCACTCCATCAAGCTCTCTCTCGACGACCCAGATTCCTCTCTCCGCTCATGGAACGACCGCGACGACACTCCCTGTTCCTGGTTCGGCGTTTCTTGCGACCCTCAAACCAACTCCGTTCACTCTCTCGACCTCTCTAACACCAACATCGCCGGCCCATTTCCTTCCCTCCTTTGCCGTCTCCAGAATCTCTCATTCCTCTCCCTTTACAACAATTCCATCAACATGTCCCTTCCCTCTGTTATTTCCGACTGTACCAGTCTCCTCCATCTCGACCTCTCTCAGAATCTCCTCACTGGCGCGCTTCCTAGCTCGATTGCCGATCTCCCCAACCTTCACTACTTGGATTTGACAGGGAATAACTTCTCCGGCGACATTCCGGAGAGTTTCGCTCGGTTTCGGAACTTGGAAGTTCTGTCGCTTGTTTATAATCTTCTCGATGGGCCGATGCCGGCGTTTCTTGGCAACATTACGTCATTGAAGATGTTGAACCTGTCTTATAACCCGTTTGTGCCGAGCCGGATCCCGCCGGAGTTCGGGAATTTGACGAATCTTGAGGTGCTCTGGTTGACTCAGTGTAATTTGGTTGGGGAAATTCCGCAGTCTCTTGGTCGGTTGAAGCGGCTTACCGATTTGGACTTGGCGTTGAATAATCTTGAAGGTCCGATTCCGAAGTCGCTCACGGAGTTGAGTAGTGTGGTTCAGATTGAGTTGTATAATAACTCGTTAACTGGTGAGTTGCCTTCTGGGTTTTCGAATCTGACTTCATTGCGACTGTTTGACGCTTCGATGAATGGTTTGACTGGGGCGATTCCGGATGAGTTGTGTCAATTGCCGCTTGAGAGTCTCAATCTCTACGAGAACAAGTTTGAAGGGATATTACCGGAAAGCATTGCGAACTCGCGGGGTTTGTACGAACTCAGACTGTTCAGTAACCAGCTCACTGGCGAGTTACCGCGAAATCTTGGAAAGAACTCGCCGTTGAGATGGATGGATGTTTCTAACAACCAGTTTACGGGTGAAATCCCGGGGAATTTGTGTGAGAAGGGAGAGTTGGAGGAACTTCTGATGATCAACAACCAGTTTTCCGGCGAGATTCCGGCGAGTTTAGGTTCGTGCCAGAGTCTTACGAGGGTACGATTGGGTTATAATCTATTATCCGGCGAGGTACCGGCGGGATTTTGGGGCCTCCCACATGTGTATCTGTTGGAGCTGGTGAGTAACTCGTTTTCTGGGAAGATTTCGGATGCCATTGCCACTGCTAAGAACCTTTCGATTTTCATTATCTCTAAGAACAACTTCACCGGCACACTACCGACGGAGATGGGACGGCTGGAAAATCTTGTGAAGTTGCTAGCGACGGATAACAAACTAATTGGGTCACTACCAGGGAGTCTTGTGAATCTTAGGCATCTTTCGAGTTTAGATCTTCGGAATAATGAACTCTCTGGGGAACTTCCCAGTGGAATCAAATCGTGGAAGAATCTCAACGAACTCAATTTAGCAAACAATGAATTCACCGGTGAAATCCCCGAAGAAATCGGGAACTTGCCTGTTCTAAATTACCTTGATCTGTCTGGAAATCTGTTTTCTGGGGATGTACCTCTTGGGTTACAGAATTTGAAGCTCAATCTACTCAATTTATCTAACAATCACTTGTCAGGTGAGCTTCCTCCATTTTTAGCTAAGGAAATCTACAGAAACAGCTTTTTGGGGAATCCGGATTTGTGTGGACATTTCGAAAGTTTGTGCAACAGCAAAGGTGAAGCTAAAAGCCAAGGCTCTCTCTGGTTGCTGCGTTCAATCTTCGTCCTTGCTGGTATCGTGTTTATCGTTGGTGTCATCTGGTTTTACCTCAAGTACAGGAAGTTTAAGATTGCAAAGAAGGAAATGGAGAAGAGCAAATGGACATTAATGTCCTTCCACAAGTTGGATTTCAGTGAATATGAGATCTTGGAATCCCTTGACGAAGATAACATCATAGGCAGTGGATCTTCTGGTAAAGTTTACAAAGTTGTGCTCAACAATGGTGAGGCTGTTGCAGTGAAGAAACTGTTTGGAGGGATGAGGAAAGACAGCGAAAAAGGCGATATCGAGAAGGGTCAAGTTCAAGACAATGCCTTCGAAGCCGAAATTGACACTCTGGGAAAGATAAGGCACAAAAATATTGTGAAGTTATGGTGCTGCTGTGTTACAAGAGACTACAAGCTTTTAGTCTATGAATATATGCCTAATGGAAGCTTGGGAGATTTGCTTCATAGTAGTAAAAAAGGACTGCTTGATTGGCCTACTAGGTTTAAGATAGCTTTAGATGCTGCAGAAGGACTTTCTTATCTTCACCACGATTGCGTCCCTCCAATCGTTCATCGTGACGTTAAGTCAAACAACATCTTGTTGGATGGCAATTTCGGAGCACGGTTAGCAGATTTCGGTGTAGCTAAAGTCATCGATTCAACCGGGAAAGGGCCTAAATCCATGTCGGTAATTGCAGGATCTTGCGGTTACATTGCGCCTGAGTATGCTTACACACTCCGAGTGAATGAAAAAAGCGATATATACAGTTTCGGCGTGGTGATTCTCGAGCTAATAACTGGGAGGCTCCCGGTCGATCCGGAGTTCGGAGAGAAGGACTTAGTGAAATGGGTGTGTTTCACATTGGATCAAGACGGGATCGATCAAGTGATCGACCGGAAACTGGATAGCTGTTTCAAGGAGGAAATATGCAGAGTCCTTAACATTGGGTTGCTTTGCACTAGCCCACTTCCCATCAACCGGCCATCAATGAGAAAAGTGGTGAAAATGCTGCAAGAAGTTGGGGCAGAGAACCAATTGAAAAGCAACAACAAAGATGGAAAGTTAACTCCTTACTATTATGAAGATGCATCAGATCAGGGAAGTGTAGCTTAG 3009 46.0 MLLHPLLLFFFFFFFIFLSNPSLLSFSLTQEGLYLHSIKLSLDDPDSSLRSWNDRDDTPCSWFGVSCDPQTNSVHSLDLSNTNIAGPFPSLLCRLQNLSFLSLYNNSINMSLPSVISDCTSLLHLDLSQNLLTGALPSSIADLPNLHYLDLTGNNFSGDIPESFARFRNLEVLSLVYNLLDGPMPAFLGNITSLKMLNLSYNPFVPSRIPPEFGNLTNLEVLWLTQCNLVGEIPQSLGRLKRLTDLDLALNNLEGPIPKSLTELSSVVQIELYNNSLTGELPSGFSNLTSLRLFDASMNGLTGAIPDELCQLPLESLNLYENKFEGILPESIANSRGLYELRLFSNQLTGELPRNLGKNSPLRWMDVSNNQFTGEIPGNLCEKGELEELLMINNQFSGEIPASLGSCQSLTRVRLGYNLLSGEVPAGFWGLPHVYLLELVSNSFSGKISDAIATAKNLSIFIISKNNFTGTLPTEMGRLENLVKLLATDNKLIGSLPGSLVNLRHLSSLDLRNNELSGELPSGIKSWKNLNELNLANNEFTGEIPEEIGNLPVLNYLDLSGNLFSGDVPLGLQNLKLNLLNLSNNHLSGELPPFLAKEIYRNSFLGNPDLCGHFESLCNSKGEAKSQGSLWLLRSIFVLAGIVFIVGVIWFYLKYRKFKIAKKEMEKSKWTLMSFHKLDFSEYEILESLDEDNIIGSGSSGKVYKVVLNNGEAVAVKKLFGGMRKDSEKGDIEKGQVQDNAFEAEIDTLGKIRHKNIVKLWCCCVTRDYKLLVYEYMPNGSLGDLLHSSKKGLLDWPTRFKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGNFGARLADFGVAKVIDSTGKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELITGRLPVDPEFGEKDLVKWVCFTLDQDGIDQVIDRKLDSCFKEEICRVLNIGLLCTSPLPINRPSMRKVVKMLQEVGAENQLKSNNKDGKLTPYYYEDASDQGSVA 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6626657 6629767 + CcPI632755_03g006510.1 Cco03g0651 174010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0651 1002 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 972 IPR050647 -
Cco03g0651 1002 Pfam Protein kinase domain 692 909 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0651 1002 Pfam Leucine rich repeat 144 203 IPR001611 GO:0005515(InterPro)
Cco03g0651 1002 Pfam Leucine rich repeat 504 563 IPR001611 GO:0005515(InterPro)
Cco03g0651 1002 SUPERFAMILY RNI-like 65 282 - -
Cco03g0651 1002 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 777 986 - -
Cco03g0651 1002 Gene3D Ribonuclease Inhibitor 337 621 IPR032675 -
Cco03g0651 1002 Gene3D Ribonuclease Inhibitor 27 205 IPR032675 -
Cco03g0651 1002 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Cco03g0651 1002 FunFam Leucine-rich receptor-like protein kinase family protein 209 307 - -
Cco03g0651 1002 SUPERFAMILY RNI-like 209 585 - -
Cco03g0651 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0651 1002 FunFam Receptor-like protein kinase HSL1 673 776 - -
Cco03g0651 1002 SUPERFAMILY Protein kinase-like (PK-like) 680 969 IPR011009 -
Cco03g0651 1002 ProSiteProfiles Protein kinase domain profile. 689 972 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0651 1002 Gene3D Ribonuclease Inhibitor 206 264 IPR032675 -
Cco03g0651 1002 Gene3D Ribonuclease Inhibitor 265 336 IPR032675 -
Cco03g0651 1002 Gene3D Transferase(Phosphotransferase) domain 1 777 996 - -
Cco03g0651 1002 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 28 191 - -
Cco03g0651 1002 FunFam Receptor-like protein kinase HSL1 313 620 - -
Cco03g0651 1002 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524(InterPro)
Cco03g0651 1002 Gene3D Phosphorylase Kinase; domain 1 654 776 - -
Cco03g0651 1002 SMART LRR_typ_2 216 240 IPR003591 -
Cco03g0651 1002 SMART LRR_typ_2 95 119 IPR003591 -
Cco03g0651 1002 SMART LRR_typ_2 288 312 IPR003591 -
Cco03g0651 1002 SMART LRR_typ_2 503 526 IPR003591 -
Cco03g0651 1002 SMART LRR_typ_2 143 166 IPR003591 -
Cco03g0651 1002 SMART LRR_typ_2 191 215 IPR003591 -
Cco03g0651 1002 SMART serkin_6 689 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0651 1002 Pfam Leucine Rich Repeat 386 407 IPR001611 GO:0005515(InterPro)
Cco03g0651 1002 Pfam Leucine Rich Repeat 218 240 IPR001611 GO:0005515(InterPro)
Cco03g0651 1002 Pfam Leucine Rich Repeat 362 381 IPR001611 GO:0005515(InterPro)
Cco03g0651 1002 Pfam Leucine Rich Repeat 121 143 IPR001611 GO:0005515(InterPro)
Cco03g0651 1002 Pfam Leucine Rich Repeat 269 288 IPR001611 GO:0005515(InterPro)
Cco03g0651 1002 Pfam Leucine Rich Repeat 314 334 IPR001611 GO:0005515(InterPro)
Cco03g0651 1002 Pfam Leucine Rich Repeat 577 596 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0651 Cco-Chr3:6626657 Cco10g0762 Cco-Chr10:12065143 7.70E-89 dispersed
Cco02g0255 Cco-Chr2:2367047 Cco03g0651 Cco-Chr3:6626657 3.10E-167 transposed
Cco08g1362 Cco-Chr8:25541053 Cco03g0651 Cco-Chr3:6626657 2.50E-79 transposed
Cco11g1560 Cco-Chr11:28491452 Cco03g0651 Cco-Chr3:6626657 4.10E-23 transposed
Cco03g0651 Cco-Chr3:6626657 Cco04g2113 Cco-Chr4:35000119 2.00E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86661 PF00069 Pkinase 1.50E-43 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0651 - - - 0.0