Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0656 ATGCCTGTCCCTTTTTCTCTCCTCTGTTTTCTCACTCTGCTCCTCAGTTTCCACACACCATTAAAATGTGCAGCAGCAGCAGCAGCACCACCACCTAAACAAGCCTCCTCCCGCCGCCACCGCCTCCTCTCCCTCGACTACTACAACAAAACATGCCCTCACCTCGACCAACTCGTCTCCTCGATCACTACCCAACAGTTCAGAGATGCACCAGTCTCTGCTCCAGCAACACTCCGCCTCTTCTTCCATGATTGCTTTGTAGAAGGTTGTGATGGGTCGATTCTGATATCCACAAAGCCAGGCAGCAAAGTGGCGGCGGAAAAGGATGCAGCGGACAACAAAGGGCTGAGACCGGAAGGATTTGAAAGCATCAAGAAAGCGAAGGCGTTGGTTGAGAGCAAGTGCCCTGGCGTTGTGTCTTGTGCTGACATCCTCGCAATTGCAGCCAGAGATTTTGTCCATTTGGCAGGAGGGCCATATTACCAGGTGAAGAAGGGTCGATGGGACGGGAAGATATCAATGGCGTCCAGAGTAGGTTCTAATCTGCCGCGAGCAAATTCTACCGTCGATCAGCTTCTCAAACTCTTCAATTCCAAAGGTCTATCCGCCGATGACCTCGTTGTCCTCTCAGGTGCGCATACGATTGGATTTGCGCACTGCGAGCACTTCGCGAACCGTCTTTACGACTACAGAGGCACGAAGCAACCGGATCCGGCGATCGACGGGAGGCTGCTGAAGGAGCTTAAAATGTCGTGCCCTAGGTACGGCGGAAATACGGATATAGTGGCGCCGTTCGACGTAACGACGCCGTTTGTGTTCGATCATGCGTACTACGGGAATTTGGAAGGTAAATTGGGACTGTTGGCTACGGATCAAGCTCTGGTTTCTGATGCGAGGATGAAGACGATGGTGCAGAGTTTGGCGAAGGATAAGCAGAAGTTTTTTCAAGCTTTCGCGGCGGCGATGGACAAAATGGGGTCGATTGGTGTGAAGAGGGGACGAAGACATGGAGAGCGAAGGACGGATTGTAGCGTTCATCAGAGTTAA 1047 52.15 MPVPFSLLCFLTLLLSFHTPLKCAAAAAAPPPKQASSRRHRLLSLDYYNKTCPHLDQLVSSITTQQFRDAPVSAPATLRLFFHDCFVEGCDGSILISTKPGSKVAAEKDAADNKGLRPEGFESIKKAKALVESKCPGVVSCADILAIAARDFVHLAGGPYYQVKKGRWDGKISMASRVGSNLPRANSTVDQLLKLFNSKGLSADDLVVLSGAHTIGFAHCEHFANRLYDYRGTKQPDPAIDGRLLKELKMSCPRYGGNTDIVAPFDVTTPFVFDHAYYGNLEGKLGLLATDQALVSDARMKTMVQSLAKDKQKFFQAFAAAMDKMGSIGVKRGRRHGERRTDCSVHQS 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6689126 6691921 - CcPI632755_03g006560.1 Cco03g0656 174015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0656 348 ProSiteProfiles Plant heme peroxidase family profile. 42 347 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0656 348 Pfam Peroxidase 61 310 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0656 348 SUPERFAMILY Heme-dependent peroxidases 43 345 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0656 348 FunFam Peroxidase 46 192 - -
Cco03g0656 348 PANTHER - 24 345 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0656 348 Gene3D - 46 345 - -
Cco03g0656 348 Gene3D Peroxidase, domain 2 183 325 - -
Cco03g0656 348 PRINTS Haem peroxidase superfamily signature 74 88 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0656 348 PRINTS Haem peroxidase superfamily signature 157 169 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0656 348 PRINTS Haem peroxidase superfamily signature 266 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0656 348 PRINTS Haem peroxidase superfamily signature 139 156 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0656 348 PRINTS Haem peroxidase superfamily signature 205 220 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0656 348 ProSitePatterns Peroxidases proximal heme-ligand signature. 205 215 IPR019793 -
Cco03g0656 348 PRINTS Plant peroxidase signature 76 96 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0656 348 PRINTS Plant peroxidase signature 138 148 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0656 348 PRINTS Plant peroxidase signature 157 172 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0656 348 PRINTS Plant peroxidase signature 320 333 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0656 348 PRINTS Plant peroxidase signature 119 132 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0656 348 PRINTS Plant peroxidase signature 280 297 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0656 348 PRINTS Plant peroxidase signature 52 71 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0656 348 PRINTS Plant peroxidase signature 204 216 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0656 348 PRINTS Plant peroxidase signature 264 279 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0656 348 FunFam Peroxidase 183 325 - -
Cco03g0656 348 CDD secretory_peroxidase 43 345 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco03g0656 348 ProSitePatterns Peroxidases active site signature. 74 85 IPR019794 GO:0004601(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0656 Cco-Chr3:6689126 Cco11g0728 Cco-Chr11:8021669 8.40E-75 dispersed
Cco03g0656 Cco-Chr3:6689126 Cco01g1437 Cco-Chr1:26147403 3.30E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0656 K00430 - csv:101216263 646.736