Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0672 ATGGTGATGGGAGAGAGAAAGAATAATAATGAAGATCAATATGAAGGTGGAATTAAGCTGTTTGGGGCAACAATTATGTTGCAAAATAAAAGGCAAATCAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGTCAATAAATCAGATCAGCAATCACTAGAAAAAAGGCCTGAGAAGATCATCCCTTGCCCAAGATGCAAAAGCATGGACACCAAATTTTGTTACTTCAATAATTACAATGTTAATCAGCCAAGGCATTTCTGTAAGGGCTGCCAAAGGTACTGGACTGCCGGCGGGGCCCTTCGCAACGTCCCCGTCGGAGCCGGCCGTCGCAAAACCAAGCCCCCTTGTCGGACCTTCGCTGGCTTGCCAGAAAATTGTGTCTTTGATTCTTCAGGGATCGTTGCGGTTCAACCGTTTGAGTTGGAAGGGATGGTCGAGGAGTGGCATGTCGTCGCTGCCACCGCCACACAAGGCGGTTTTCGACAAATTTTACCGGTAAAGCGGCGGAGGGATTGCCAAGATGGCCAAACTTGTTGA 555 46.67 MVMGERKNNNEDQYEGGIKLFGATIMLQNKRQIKEEEEEEEEEEEEEEEVNKSDQQSLEKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFAGLPENCVFDSSGIVAVQPFELEGMVEEWHVVAATATQGGFRQILPVKRRRDCQDGQTC 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6850220 6850774 - CcPI632755_03g006720.1 Cco03g0672 174031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0672 184 Coils Coil 23 56 - -
Cco03g0672 184 PANTHER CYCLIC DOF FACTOR 2 29 119 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g0672 184 MobiDBLite consensus disorder prediction 30 61 - -
Cco03g0672 184 ProSiteProfiles Zinc finger Dof-type profile. 66 120 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco03g0672 184 MobiDBLite consensus disorder prediction 36 52 - -
Cco03g0672 184 Pfam Dof domain, zinc finger 64 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco03g0672 184 ProSitePatterns Zinc finger Dof-type signature. 68 104 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0672 Cco-Chr3:6850220 Cco10g1583 Cco-Chr10:29078686 5.10E-31 dispersed
Cco03g0672 Cco-Chr3:6850220 Cco04g2154 Cco-Chr4:35298417 2.60E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58926 PF02701 zf-Dof 6.60E-32 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0672 - - - 0.0