Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0672 | ATGGTGATGGGAGAGAGAAAGAATAATAATGAAGATCAATATGAAGGTGGAATTAAGCTGTTTGGGGCAACAATTATGTTGCAAAATAAAAGGCAAATCAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGTCAATAAATCAGATCAGCAATCACTAGAAAAAAGGCCTGAGAAGATCATCCCTTGCCCAAGATGCAAAAGCATGGACACCAAATTTTGTTACTTCAATAATTACAATGTTAATCAGCCAAGGCATTTCTGTAAGGGCTGCCAAAGGTACTGGACTGCCGGCGGGGCCCTTCGCAACGTCCCCGTCGGAGCCGGCCGTCGCAAAACCAAGCCCCCTTGTCGGACCTTCGCTGGCTTGCCAGAAAATTGTGTCTTTGATTCTTCAGGGATCGTTGCGGTTCAACCGTTTGAGTTGGAAGGGATGGTCGAGGAGTGGCATGTCGTCGCTGCCACCGCCACACAAGGCGGTTTTCGACAAATTTTACCGGTAAAGCGGCGGAGGGATTGCCAAGATGGCCAAACTTGTTGA | 555 | 46.67 | MVMGERKNNNEDQYEGGIKLFGATIMLQNKRQIKEEEEEEEEEEEEEEEVNKSDQQSLEKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCRTFAGLPENCVFDSSGIVAVQPFELEGMVEEWHVVAATATQGGFRQILPVKRRRDCQDGQTC | 184 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6850220 | 6850774 | - | CcPI632755_03g006720.1 | Cco03g0672 | 174031 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0672 | 184 | Coils | Coil | 23 | 56 | - | - | |
Cco03g0672 | 184 | PANTHER | CYCLIC DOF FACTOR 2 | 29 | 119 | IPR045174 | GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco03g0672 | 184 | MobiDBLite | consensus disorder prediction | 30 | 61 | - | - | |
Cco03g0672 | 184 | ProSiteProfiles | Zinc finger Dof-type profile. | 66 | 120 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cco03g0672 | 184 | MobiDBLite | consensus disorder prediction | 36 | 52 | - | - | |
Cco03g0672 | 184 | Pfam | Dof domain, zinc finger | 64 | 119 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cco03g0672 | 184 | ProSitePatterns | Zinc finger Dof-type signature. | 68 | 104 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0672 | Cco-Chr3:6850220 | Cco10g1583 | Cco-Chr10:29078686 | 5.10E-31 | dispersed | |
Cco03g0672 | Cco-Chr3:6850220 | Cco04g2154 | Cco-Chr4:35298417 | 2.60E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58926 | PF02701 | zf-Dof | 6.60E-32 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0672 | - | - | - | 0.0 |